Clone: 1686682740821248 G11
Tagged gene: Su(dx)
Identifier: FBgn0003557
| Clone | FlyFos027162(pRedFlp-Hgr)(Su(dx)[20330]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2L | ||||||||
| 2045525 | 2048054 | 15457 | 17986 | - | gene | Kebab | coding_transcript | |
| 2037802 | 2044373 | 19138 | 26771 | - | gene | Su(dx) | coding_transcript | |
| 2037802 | 2044373 | 19138 | 26771 | - | mrna | FBtr0077822 | coding_transcript | |
| 2038020 | 2044373 | 19138 | 26553 | - | mrna | FBtr0077823 | coding_transcript | |
| 2039733 | 2044373 | 19138 | 24840 | - | mrna | FBtr0077824 | coding_transcript | |
| 2042914 | 2044373 | 19138 | 21659 | - | exon | coding_transcript | ||
| 2042914 | 2044373 | 19138 | 21659 | - | exon | coding_transcript | ||
| 2042914 | 2044373 | 19138 | 21659 | - | exon | coding_transcript | ||
| 2043184 | 2044373 | 19138 | 20327 | - | three_prime_utr | coding_transcript | ||
| 2043184 | 2044373 | 19138 | 20327 | - | three_prime_utr | coding_transcript | ||
| 2043184 | 2044373 | 19138 | 20327 | - | three_prime_utr | coding_transcript | ||
| 2042914 | 2043183 | 20328 | 21659 | - | cds | coding_transcript | ||
| 2042914 | 2043183 | 20328 | 21659 | - | cds | coding_transcript | ||
| 2042914 | 2043183 | 20328 | 21659 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 20404 | 20437 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 20445 | 20516 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 20517 | 20537 | - | cds | TEV | CLC | |
| 2313 | 2336 | 20538 | 20561 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 20562 | 20603 | - | cds | V5 | CLC | |
| 1548 | 2264 | 20610 | 21326 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 21333 | 21392 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2L | ||||||||
| 2042852 | 2042913 | 21660 | 21721 | - | intron | coding_transcript | ||
| 2042852 | 2042913 | 21660 | 21721 | - | intron | coding_transcript | ||
| 2042852 | 2042913 | 21660 | 21721 | - | intron | coding_transcript | ||
| 2042653 | 2042851 | 21722 | 21920 | - | exon | coding_transcript | ||
| 2042653 | 2042851 | 21722 | 21920 | - | cds | coding_transcript | ||
| 2042653 | 2042851 | 21722 | 21920 | - | exon | coding_transcript | ||
| 2042653 | 2042851 | 21722 | 21920 | - | cds | coding_transcript | ||
| 2042653 | 2042851 | 21722 | 21920 | - | exon | coding_transcript | ||
| 2042653 | 2042851 | 21722 | 21920 | - | cds | coding_transcript | ||
| 2042570 | 2042652 | 21921 | 22003 | - | intron | coding_transcript | ||
| 2042570 | 2042652 | 21921 | 22003 | - | intron | coding_transcript | ||
| 2042570 | 2042652 | 21921 | 22003 | - | intron | coding_transcript | ||
| 2041647 | 2042569 | 22004 | 22926 | - | exon | coding_transcript | ||
| 2041647 | 2042569 | 22004 | 22926 | - | cds | coding_transcript | ||
| 2041647 | 2042569 | 22004 | 22926 | - | exon | coding_transcript | ||
| 2041647 | 2042569 | 22004 | 22926 | - | cds | coding_transcript | ||
| 2041647 | 2042569 | 22004 | 22926 | - | exon | coding_transcript | ||
| 2041647 | 2042569 | 22004 | 22926 | - | cds | coding_transcript | ||
| 2041574 | 2041646 | 22927 | 22999 | - | intron | coding_transcript | ||
| 2041574 | 2041646 | 22927 | 22999 | - | intron | coding_transcript | ||
| 2041574 | 2041646 | 22927 | 22999 | - | intron | coding_transcript | ||
| 2040422 | 2041573 | 23000 | 24151 | - | exon | coding_transcript | ||
| 2040422 | 2041573 | 23000 | 24151 | - | cds | coding_transcript | ||
| 2040422 | 2041573 | 23000 | 24151 | - | exon | coding_transcript | ||
| 2040422 | 2041573 | 23000 | 24151 | - | cds | coding_transcript | ||
| 2040422 | 2041573 | 23000 | 24151 | - | exon | coding_transcript | ||
| 2040422 | 2041573 | 23000 | 24151 | - | cds | coding_transcript | ||
| 2040360 | 2040421 | 24152 | 24213 | - | intron | coding_transcript | ||
| 2040360 | 2040421 | 24152 | 24213 | - | intron | coding_transcript | ||
| 2040360 | 2040421 | 24152 | 24213 | - | intron | coding_transcript | ||
| 2040217 | 2040359 | 24214 | 24356 | - | exon | coding_transcript | ||
| 2040217 | 2040359 | 24214 | 24356 | - | cds | coding_transcript | ||
| 2040217 | 2040359 | 24214 | 24356 | - | exon | coding_transcript | ||
| 2040217 | 2040359 | 24214 | 24356 | - | cds | coding_transcript | ||
| 2040217 | 2040359 | 24214 | 24356 | - | exon | coding_transcript | ||
| 2040217 | 2040359 | 24214 | 24356 | - | cds | coding_transcript | ||
| 2040155 | 2040216 | 24357 | 24418 | - | intron | coding_transcript | ||
| 2040155 | 2040216 | 24357 | 24418 | - | intron | coding_transcript | ||
| 2040155 | 2040216 | 24357 | 24418 | - | intron | coding_transcript | ||
| 2039930 | 2040154 | 24419 | 24643 | - | exon | coding_transcript | ||
| 2039930 | 2040154 | 24419 | 24643 | - | exon | coding_transcript | ||
| 2039930 | 2040154 | 24419 | 24643 | - | exon | coding_transcript | ||
| 2039992 | 2040154 | 24419 | 24581 | - | cds | coding_transcript | ||
| 2039992 | 2040154 | 24419 | 24581 | - | cds | coding_transcript | ||
| 2039992 | 2040154 | 24419 | 24581 | - | cds | coding_transcript | ||
| 2039930 | 2039991 | 24582 | 24643 | - | five_prime_utr | coding_transcript | ||
| 2039930 | 2039991 | 24582 | 24643 | - | five_prime_utr | coding_transcript | ||
| 2039930 | 2039991 | 24582 | 24643 | - | five_prime_utr | coding_transcript | ||
| 2038009 | 2039929 | 24644 | 26564 | - | intron | coding_transcript | ||
| 2038225 | 2039929 | 24644 | 26348 | - | intron | coding_transcript | ||
| 2039805 | 2039929 | 24644 | 24768 | - | intron | coding_transcript | ||
| 2039733 | 2039804 | 24769 | 24840 | - | exon | coding_transcript | ||
| 2039733 | 2039804 | 24769 | 24840 | - | five_prime_utr | coding_transcript | ||
| 2038020 | 2038224 | 26349 | 26553 | - | exon | coding_transcript | ||
| 2038020 | 2038224 | 26349 | 26553 | - | five_prime_utr | coding_transcript | ||
| 2037802 | 2038008 | 26565 | 26771 | - | exon | coding_transcript | ||
| 2037802 | 2038008 | 26565 | 26771 | - | five_prime_utr | coding_transcript | ||
| 2036456 | 2037247 | 27326 | 28117 | + | gene | lectin-22C | coding_transcript | |
| 2032635 | 2035936 | 28637 | 31938 | + | gene | CG42296 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Su(dx)[20330]::S000169_fly_pretag_rev
CTGGAATTAAACATTAATCAACAAACCGACCACAAATCGACTGCCACTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
Su(dx)[20330]::S000169_fly_pretag_fwd
TGGAGAAGCTGACCTTTGCCATCGAGGAGACTGAGGGCTTCTGCCAGGAAgaagtgcataccaatcaggacccgc
|
Fasta
|