Clone: 35033876546138376 C05
Tagged gene: CG5098
Identifier: FBgn0034300
| Clone | FlyFos024265(pRedFlp-Hgr)(CG5098[20100]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 13997505 | 13997744 | 10067 | 10306 | - | gene | CG34196 | coding_transcript | |
| 13988555 | 13995891 | 11920 | 19256 | + | gene | CG5756 | coding_transcript | |
| 13982523 | 13988618 | 19193 | 26350 | - | gene | CG5098 | coding_transcript | |
| 13982523 | 13988618 | 19193 | 26350 | - | mrna | FBtr0086732 | coding_transcript | |
| 13987180 | 13988618 | 19193 | 21693 | - | exon | coding_transcript | ||
| 13987714 | 13988618 | 19193 | 20097 | - | three_prime_utr | coding_transcript | ||
| 13983266 | 13988538 | 19273 | 25607 | - | mrna | FBtr0113092 | coding_transcript | |
| 13987180 | 13988538 | 19273 | 21693 | - | exon | coding_transcript | ||
| 13987714 | 13988538 | 19273 | 20097 | - | three_prime_utr | coding_transcript | ||
| 13987180 | 13987713 | 20098 | 21693 | - | cds | coding_transcript | ||
| 13987180 | 13987713 | 20098 | 21693 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 20174 | 20207 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 20215 | 20286 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 20287 | 20307 | - | cds | TEV | CLC | |
| 2313 | 2336 | 20308 | 20331 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 20332 | 20373 | - | cds | V5 | CLC | |
| 1548 | 2264 | 20380 | 21096 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 21103 | 21162 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 13987111 | 13987179 | 21694 | 21762 | - | intron | coding_transcript | ||
| 13987111 | 13987179 | 21694 | 21762 | - | intron | coding_transcript | ||
| 13984553 | 13987110 | 21763 | 24320 | - | exon | coding_transcript | ||
| 13984553 | 13987110 | 21763 | 24320 | - | cds | coding_transcript | ||
| 13984553 | 13987110 | 21763 | 24320 | - | exon | coding_transcript | ||
| 13984553 | 13987110 | 21763 | 24320 | - | cds | coding_transcript | ||
| 13984493 | 13984552 | 24321 | 24380 | - | intron | coding_transcript | ||
| 13984505 | 13984552 | 24321 | 24368 | - | intron | coding_transcript | ||
| 13984047 | 13984504 | 24369 | 24826 | - | exon | coding_transcript | ||
| 13984047 | 13984504 | 24369 | 24826 | - | cds | coding_transcript | ||
| 13984047 | 13984492 | 24381 | 24826 | - | exon | coding_transcript | ||
| 13984047 | 13984492 | 24381 | 24826 | - | cds | coding_transcript | ||
| 13983984 | 13984046 | 24827 | 24889 | - | intron | coding_transcript | ||
| 13983984 | 13984046 | 24827 | 24889 | - | intron | coding_transcript | ||
| 13983787 | 13983983 | 24890 | 25086 | - | exon | coding_transcript | ||
| 13983787 | 13983983 | 24890 | 25086 | - | exon | coding_transcript | ||
| 13983787 | 13983983 | 24890 | 25086 | - | cds | coding_transcript | ||
| 13983805 | 13983983 | 24890 | 25068 | - | cds | coding_transcript | ||
| 13983787 | 13983804 | 25069 | 25086 | - | five_prime_utr | coding_transcript | ||
| 13982729 | 13983786 | 25087 | 26144 | - | intron | coding_transcript | ||
| 13983564 | 13983786 | 25087 | 25309 | - | intron | coding_transcript | ||
| 13983399 | 13983563 | 25310 | 25474 | - | exon | coding_transcript | ||
| 13983399 | 13983563 | 25310 | 25474 | - | cds | coding_transcript | ||
| 13983341 | 13983398 | 25475 | 25532 | - | intron | coding_transcript | ||
| 13983266 | 13983340 | 25533 | 25607 | - | exon | coding_transcript | ||
| 13983266 | 13983340 | 25533 | 25607 | - | cds | coding_transcript | ||
| 13982523 | 13982728 | 26145 | 26350 | - | exon | coding_transcript | ||
| 13982523 | 13982728 | 26145 | 26350 | - | five_prime_utr | coding_transcript | ||
| 13981233 | 13982212 | 26661 | 27640 | + | gene | CG5757 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG5098[20100]::S000169_fly_pretag_fwd
CACCGCCAGCACCCGCACCGCCACCCGCGTTCAATATCCATTCGCTTCCCgaagtgcataccaatcaggacccgc
|
Fasta
|
|
CG5098[20100]::S000169_fly_pretag_rev
GCTCAACGCTTGGCGACCAGGCGGCATTTCTGGACGCGCACGCGTACTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|