Clone: 35033876546138376 C02
Tagged gene: AP-1sigma
Identifier: FBgn0039132
| Clone | FlyFos023617(pRedFlp-Hgr)(AP-1sigma[21074]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 19784376 | 19788277 | 19459 | 24422 | - | gene | AP-1sigma | coding_transcript | |
| 19784376 | 19788277 | 19459 | 24422 | - | mrna | FBtr0084496 | coding_transcript | |
| 19787773 | 19788277 | 19459 | 19963 | - | exon | coding_transcript | ||
| 19787818 | 19788277 | 19459 | 19918 | - | three_prime_utr | coding_transcript | ||
| 19787773 | 19787817 | 19919 | 19963 | - | cds | coding_transcript | ||
| 19785316 | 19787772 | 19964 | 23482 | - | intron | coding_transcript | ||
| 19784376 | 19787226 | 20510 | 24422 | - | mrna | FBtr0305039 | coding_transcript | |
| 19786620 | 19787226 | 20510 | 22178 | - | exon | coding_transcript | ||
| 19786665 | 19787226 | 20510 | 21071 | - | three_prime_utr | coding_transcript | ||
| 19784376 | 19786840 | 20896 | 24422 | - | mrna | FBtr0305040 | coding_transcript | |
| 19786620 | 19786840 | 20896 | 22178 | - | exon | coding_transcript | ||
| 19786665 | 19786840 | 20896 | 21071 | - | three_prime_utr | coding_transcript | ||
| 19786620 | 19786664 | 21072 | 22178 | - | cds | coding_transcript | ||
| 19786620 | 19786664 | 21072 | 22178 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 21148 | 21181 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 21189 | 21260 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 21261 | 21281 | - | cds | TEV | CLC | |
| 2313 | 2336 | 21282 | 21305 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 21306 | 21347 | - | cds | V5 | CLC | |
| 1548 | 2264 | 21354 | 22070 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 22077 | 22136 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 19785316 | 19786619 | 22179 | 23482 | - | intron | coding_transcript | ||
| 19785316 | 19786619 | 22179 | 23482 | - | intron | coding_transcript | ||
| 19785178 | 19785315 | 23483 | 23620 | - | exon | coding_transcript | ||
| 19785178 | 19785315 | 23483 | 23620 | - | cds | coding_transcript | ||
| 19785178 | 19785315 | 23483 | 23620 | - | exon | coding_transcript | ||
| 19785178 | 19785315 | 23483 | 23620 | - | cds | coding_transcript | ||
| 19785178 | 19785315 | 23483 | 23620 | - | exon | coding_transcript | ||
| 19785178 | 19785315 | 23483 | 23620 | - | cds | coding_transcript | ||
| 19785111 | 19785177 | 23621 | 23687 | - | intron | coding_transcript | ||
| 19785111 | 19785177 | 23621 | 23687 | - | intron | coding_transcript | ||
| 19785111 | 19785177 | 23621 | 23687 | - | intron | coding_transcript | ||
| 19785002 | 19785110 | 23688 | 23796 | - | exon | coding_transcript | ||
| 19785002 | 19785110 | 23688 | 23796 | - | cds | coding_transcript | ||
| 19785002 | 19785110 | 23688 | 23796 | - | exon | coding_transcript | ||
| 19785002 | 19785110 | 23688 | 23796 | - | cds | coding_transcript | ||
| 19785002 | 19785110 | 23688 | 23796 | - | exon | coding_transcript | ||
| 19785002 | 19785110 | 23688 | 23796 | - | cds | coding_transcript | ||
| 19784933 | 19785001 | 23797 | 23865 | - | intron | coding_transcript | ||
| 19784933 | 19785001 | 23797 | 23865 | - | intron | coding_transcript | ||
| 19784933 | 19785001 | 23797 | 23865 | - | intron | coding_transcript | ||
| 19784754 | 19784932 | 23866 | 24044 | - | exon | coding_transcript | ||
| 19784754 | 19784932 | 23866 | 24044 | - | cds | coding_transcript | ||
| 19784754 | 19784932 | 23866 | 24044 | - | exon | coding_transcript | ||
| 19784754 | 19784932 | 23866 | 24044 | - | cds | coding_transcript | ||
| 19784754 | 19784932 | 23866 | 24044 | - | exon | coding_transcript | ||
| 19784754 | 19784932 | 23866 | 24044 | - | cds | coding_transcript | ||
| 19784521 | 19784753 | 24045 | 24277 | - | intron | coding_transcript | ||
| 19784521 | 19784753 | 24045 | 24277 | - | intron | coding_transcript | ||
| 19784521 | 19784753 | 24045 | 24277 | - | intron | coding_transcript | ||
| 19784376 | 19784520 | 24278 | 24422 | - | exon | coding_transcript | ||
| 19784376 | 19784520 | 24278 | 24422 | - | exon | coding_transcript | ||
| 19784376 | 19784520 | 24278 | 24422 | - | exon | coding_transcript | ||
| 19784518 | 19784520 | 24278 | 24280 | - | cds | coding_transcript | ||
| 19784518 | 19784520 | 24278 | 24280 | - | cds | coding_transcript | ||
| 19784518 | 19784520 | 24278 | 24280 | - | cds | coding_transcript | ||
| 19784376 | 19784517 | 24281 | 24422 | - | five_prime_utr | coding_transcript | ||
| 19784376 | 19784517 | 24281 | 24422 | - | five_prime_utr | coding_transcript | ||
| 19784376 | 19784517 | 24281 | 24422 | - | five_prime_utr | coding_transcript | ||
| 19777852 | 19784117 | 24681 | 30946 | + | gene | Aats-glupro | coding_transcript | |
| 19769350 | 19774141 | 34657 | 39448 | + | gene | CG12268 | coding_transcript | |
| 19761680 | 19768824 | 39974 | 47118 | + | gene | Gdh | coding_transcript | |
| 19759637 | 19761686 | 47112 | 49161 | - | gene | CG5854 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
AP-1sigma[21074]::S000169_fly_pretag_fwd
TACTCCAGGACGAAGCCGTTGAGGGCACTTTAAGAGACATTGGACTCCTCgaagtgcataccaatcaggacccgc
|
Fasta
|
|
AP-1sigma[21074]::S000169_fly_pretag_rev
GTGTGCGTGTAATATCAACTACATAATTTCTAGGGTGTTCTAGTTCTTTActtgtcgtcgtcatccttgtagtca
|
Fasta
|