Clone: 8137439615386962 A11
Tagged gene: CG12140
Identifier: FBgn0033465
| Clone | FlyFos021666(pRedFlp-Hgr)(CG12140[16710]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | good | [view] |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 5798398 | 5800993 | 16585 | 20242 | - | gene | CG12140 | coding_transcript | |
| 5798398 | 5800993 | 16585 | 20242 | - | mrna | FBtr0088384 | coding_transcript | |
| 5798398 | 5800993 | 16585 | 20242 | - | mrna | FBtr0308338 | coding_transcript | |
| 5800333 | 5800993 | 16585 | 18307 | - | exon | coding_transcript | ||
| 5800333 | 5800993 | 16585 | 18307 | - | exon | coding_transcript | ||
| 5800871 | 5800993 | 16585 | 16707 | - | three_prime_utr | coding_transcript | ||
| 5800871 | 5800993 | 16585 | 16707 | - | three_prime_utr | coding_transcript | ||
| 5800333 | 5800870 | 16708 | 18307 | - | cds | coding_transcript | ||
| 5800333 | 5800870 | 16708 | 18307 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 16784 | 16817 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 16825 | 16896 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 16897 | 16917 | - | cds | TEV | CLC | |
| 2313 | 2336 | 16918 | 16941 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 16942 | 16983 | - | cds | V5 | CLC | |
| 1548 | 2264 | 16990 | 17706 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 17713 | 17772 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 5800269 | 5800332 | 18308 | 18371 | - | intron | coding_transcript | ||
| 5800269 | 5800332 | 18308 | 18371 | - | intron | coding_transcript | ||
| 5799819 | 5800268 | 18372 | 18821 | - | exon | coding_transcript | ||
| 5799819 | 5800268 | 18372 | 18821 | - | cds | coding_transcript | ||
| 5799819 | 5800268 | 18372 | 18821 | - | exon | coding_transcript | ||
| 5799819 | 5800268 | 18372 | 18821 | - | cds | coding_transcript | ||
| 5799754 | 5799818 | 18822 | 18886 | - | intron | coding_transcript | ||
| 5799754 | 5799818 | 18822 | 18886 | - | intron | coding_transcript | ||
| 5799182 | 5799753 | 18887 | 19458 | - | exon | coding_transcript | ||
| 5799182 | 5799753 | 18887 | 19458 | - | cds | coding_transcript | ||
| 5799182 | 5799753 | 18887 | 19458 | - | exon | coding_transcript | ||
| 5799182 | 5799753 | 18887 | 19458 | - | cds | coding_transcript | ||
| 5799126 | 5799181 | 19459 | 19514 | - | intron | coding_transcript | ||
| 5799126 | 5799181 | 19459 | 19514 | - | intron | coding_transcript | ||
| 5798899 | 5799125 | 19515 | 19741 | - | exon | coding_transcript | ||
| 5798899 | 5799125 | 19515 | 19741 | - | cds | coding_transcript | ||
| 5798899 | 5799125 | 19515 | 19741 | - | exon | coding_transcript | ||
| 5798899 | 5799125 | 19515 | 19741 | - | cds | coding_transcript | ||
| 5798788 | 5798898 | 19742 | 19852 | - | intron | coding_transcript | ||
| 5798788 | 5798898 | 19742 | 19852 | - | intron | coding_transcript | ||
| 5798398 | 5798787 | 19853 | 20242 | - | exon | coding_transcript | ||
| 5798477 | 5798787 | 19853 | 20163 | - | exon | coding_transcript | ||
| 5798760 | 5798787 | 19853 | 19880 | - | cds | coding_transcript | ||
| 5798760 | 5798787 | 19853 | 19880 | - | cds | coding_transcript | ||
| 5798398 | 5798759 | 19881 | 20242 | - | five_prime_utr | coding_transcript | ||
| 5798477 | 5798759 | 19881 | 20163 | - | five_prime_utr | coding_transcript | ||
| 5798420 | 5798476 | 20164 | 20220 | - | intron | coding_transcript | ||
| 5798398 | 5798419 | 20221 | 20242 | - | exon | coding_transcript | ||
| 5798398 | 5798419 | 20221 | 20242 | - | five_prime_utr | coding_transcript | ||
| 5793796 | 5797962 | 20678 | 24844 | - | gene | Fmrf | coding_transcript | |
| 5786523 | 5790788 | 27852 | 32117 | + | gene | CG1441 | coding_transcript | |
| 5779496 | 5786018 | 32622 | 39144 | - | gene | CG30007 | coding_transcript | |
| 5777403 | 5778625 | 40015 | 41237 | - | gene | CG30008 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG12140[16710]::S000169_fly_pretag_fwd
TCAACTGGGTGGTGCCCGAGGGAGGTGGCGGTCCCGCCTACAACGGCATGgaagtgcataccaatcaggacccgc
|
Fasta
|
|
CG12140[16710]::S000169_fly_pretag_rev
AATGAAATGCAATTGCGGTACACGGATTGGCTGCGATAGTTATCCTTTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|