Clone: 8137439615386962 E09
Tagged gene: Hml
Identifier: FBgn0029167
| Clone | FlyFos021467(pRedFlp-Hgr)(Hml[31680]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 13833297 | 13835340 | 11949 | 13992 | - | gene | CG8757 | coding_transcript | |
| 13835688 | 13836117 | 14340 | 14769 | - | gene | CG8750 | coding_transcript | |
| 13836756 | 13838416 | 15408 | 17068 | + | gene | Tsp68C | coding_transcript | |
| 13839154 | 13853113 | 17806 | 32827 | + | gene | Hml | coding_transcript | |
| 13839154 | 13853113 | 17806 | 32827 | + | mrna | FBtr0075753 | coding_transcript | |
| 13839154 | 13839414 | 17806 | 18066 | + | exon | coding_transcript | ||
| 13839154 | 13839307 | 17806 | 17959 | + | five_prime_utr | coding_transcript | ||
| 13839308 | 13839414 | 17960 | 18066 | + | cds | coding_transcript | ||
| 13839415 | 13839945 | 18067 | 18597 | + | intron | coding_transcript | ||
| 13839946 | 13840041 | 18598 | 18693 | + | exon | coding_transcript | ||
| 13839946 | 13840041 | 18598 | 18693 | + | cds | coding_transcript | ||
| 13840042 | 13840121 | 18694 | 18773 | + | intron | coding_transcript | ||
| 13840122 | 13840286 | 18774 | 18938 | + | exon | coding_transcript | ||
| 13840122 | 13840286 | 18774 | 18938 | + | cds | coding_transcript | ||
| 13840287 | 13840347 | 18939 | 18999 | + | intron | coding_transcript | ||
| 13840348 | 13840740 | 19000 | 19392 | + | exon | coding_transcript | ||
| 13840348 | 13840740 | 19000 | 19392 | + | cds | coding_transcript | ||
| 13840741 | 13840797 | 19393 | 19449 | + | intron | coding_transcript | ||
| 13840798 | 13840925 | 19450 | 19577 | + | exon | coding_transcript | ||
| 13840798 | 13840925 | 19450 | 19577 | + | cds | coding_transcript | ||
| 13840926 | 13840981 | 19578 | 19633 | + | intron | coding_transcript | ||
| 13840982 | 13841077 | 19634 | 19729 | + | exon | coding_transcript | ||
| 13840982 | 13841077 | 19634 | 19729 | + | cds | coding_transcript | ||
| 13841078 | 13841180 | 19730 | 19832 | + | intron | coding_transcript | ||
| 13841181 | 13841378 | 19833 | 20030 | + | exon | coding_transcript | ||
| 13841181 | 13841378 | 19833 | 20030 | + | cds | coding_transcript | ||
| 13841379 | 13841490 | 20031 | 20142 | + | intron | coding_transcript | ||
| 13841491 | 13841654 | 20143 | 20306 | + | exon | coding_transcript | ||
| 13841491 | 13841654 | 20143 | 20306 | + | cds | coding_transcript | ||
| 13841655 | 13841710 | 20307 | 20362 | + | intron | coding_transcript | ||
| 13841711 | 13841868 | 20363 | 20520 | + | exon | coding_transcript | ||
| 13841711 | 13841868 | 20363 | 20520 | + | cds | coding_transcript | ||
| 13841869 | 13841929 | 20521 | 20581 | + | intron | coding_transcript | ||
| 13841930 | 13842084 | 20582 | 20736 | + | exon | coding_transcript | ||
| 13841930 | 13842084 | 20582 | 20736 | + | cds | coding_transcript | ||
| 13842085 | 13842149 | 20737 | 20801 | + | intron | coding_transcript | ||
| 13842150 | 13842752 | 20802 | 21404 | + | exon | coding_transcript | ||
| 13842150 | 13842752 | 20802 | 21404 | + | cds | coding_transcript | ||
| 13842753 | 13842894 | 21405 | 21546 | + | intron | coding_transcript | ||
| 13842895 | 13844013 | 21547 | 22665 | + | exon | coding_transcript | ||
| 13842895 | 13844013 | 21547 | 22665 | + | cds | coding_transcript | ||
| 13844014 | 13844095 | 22666 | 22747 | + | intron | coding_transcript | ||
| 13844096 | 13844989 | 22748 | 23641 | + | exon | coding_transcript | ||
| 13844096 | 13844989 | 22748 | 23641 | + | cds | coding_transcript | ||
| 13844990 | 13845041 | 23642 | 23693 | + | intron | coding_transcript | ||
| 13845042 | 13845590 | 23694 | 24242 | + | exon | coding_transcript | ||
| 13845042 | 13845590 | 23694 | 24242 | + | cds | coding_transcript | ||
| 13845591 | 13845666 | 24243 | 24318 | + | intron | coding_transcript | ||
| 13845667 | 13846989 | 24319 | 25641 | + | exon | coding_transcript | ||
| 13845667 | 13846989 | 24319 | 25641 | + | cds | coding_transcript | ||
| 13846990 | 13847053 | 25642 | 25705 | + | intron | coding_transcript | ||
| 13847054 | 13847132 | 25706 | 25784 | + | exon | coding_transcript | ||
| 13847054 | 13847132 | 25706 | 25784 | + | cds | coding_transcript | ||
| 13847133 | 13847193 | 25785 | 25845 | + | intron | coding_transcript | ||
| 13847194 | 13847443 | 25846 | 26095 | + | exon | coding_transcript | ||
| 13847194 | 13847443 | 25846 | 26095 | + | cds | coding_transcript | ||
| 13847444 | 13847496 | 26096 | 26148 | + | intron | coding_transcript | ||
| 13847497 | 13848244 | 26149 | 26896 | + | exon | coding_transcript | ||
| 13847497 | 13848244 | 26149 | 26896 | + | cds | coding_transcript | ||
| 13848245 | 13848304 | 26897 | 26956 | + | intron | coding_transcript | ||
| 13848305 | 13848790 | 26957 | 27442 | + | exon | coding_transcript | ||
| 13848305 | 13848790 | 26957 | 27442 | + | cds | coding_transcript | ||
| 13848791 | 13848850 | 27443 | 27502 | + | intron | coding_transcript | ||
| 13848851 | 13849357 | 27503 | 28009 | + | exon | coding_transcript | ||
| 13848851 | 13849357 | 27503 | 28009 | + | cds | coding_transcript | ||
| 13849358 | 13849421 | 28010 | 28073 | + | intron | coding_transcript | ||
| 13849422 | 13849905 | 28074 | 28557 | + | exon | coding_transcript | ||
| 13849422 | 13849905 | 28074 | 28557 | + | cds | coding_transcript | ||
| 13849906 | 13849969 | 28558 | 28621 | + | intron | coding_transcript | ||
| 13849970 | 13851747 | 28622 | 30399 | + | exon | coding_transcript | ||
| 13849970 | 13851747 | 28622 | 30399 | + | cds | coding_transcript | ||
| 13851748 | 13851805 | 30400 | 30457 | + | intron | coding_transcript | ||
| 13851806 | 13852018 | 30458 | 30670 | + | exon | coding_transcript | ||
| 13851806 | 13852018 | 30458 | 30670 | + | cds | coding_transcript | ||
| 13852019 | 13852079 | 30671 | 30731 | + | intron | coding_transcript | ||
| 13852080 | 13852535 | 30732 | 31187 | + | exon | coding_transcript | ||
| 13852080 | 13852535 | 30732 | 31187 | + | cds | coding_transcript | ||
| 13852536 | 13852591 | 31188 | 31243 | + | intron | coding_transcript | ||
| 13852592 | 13852848 | 31244 | 31500 | + | exon | coding_transcript | ||
| 13852592 | 13852848 | 31244 | 31500 | + | cds | coding_transcript | ||
| 13852849 | 13852905 | 31501 | 31557 | + | intron | coding_transcript | ||
| 13852906 | 13853113 | 31558 | 32827 | + | exon | coding_transcript | ||
| 13852906 | 13853031 | 31558 | 32745 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 31681 | 31740 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 31747 | 32463 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 32470 | 32511 | + | cds | V5 | CLC | |
| 2313 | 2336 | 32512 | 32535 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 32536 | 32556 | + | cds | TEV | CLC | |
| 2358 | 2429 | 32557 | 32628 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 32636 | 32669 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-3L | ||||||||
| 13853032 | 13853113 | 32746 | 32827 | + | three_prime_utr | coding_transcript | ||
| 13853102 | 13859985 | 32816 | 39699 | - | gene | CG8745 | coding_transcript | |
| 13865037 | 13865732 | 44751 | 45446 | - | gene | CG32132 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Hml[31680]::S000169_fly_pretag_fwd
AGCAGGATGCGCAGTCTCCACTACTCCAATTACTCGGCAACCATAGACATgaagtgcataccaatcaggacccgc
|
Fasta
|
|
Hml[31680]::S000169_fly_pretag_rev
CATTCTTAAAACTAACGAAATGACTTTCTCAGACAACCAATAAGTTATTActtgtcgtcgtcatccttgtagtca
|
Fasta
|