Clone: 8137439615386962 A04

Tagged gene: HDAC4
Identifier: FBgn0041210

Clone FlyFos020440(pRedFlp-Hgr)(HDAC4[34261]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT
Library FlyFos 5.43 D.mel in E. coli EPI300
Genome Species: Drosophila melanogaster, Release: 5.43

Validation(click to hide details)

Type Status Download / View
Grows in selection good
NGS-based tag validation good [view]

Genes in pFlyFos vector(click to hide details)

Gene Clone relative Genome relative
Name Length Start End Strand Start End Strand
DsRed 716 8417 9132 + 8417 9132 +

Features(click to show details)

Start (Source) End (Source) Start End Strand Type Name Source
pFlyFos
1 107 1 107 - cds LacZ epicentre
4 21 4 21 - primer_bind CC2_rev epicentre
310 593 310 593 + misc_recomb attB epicentre
727 1386 727 1386 - cds Cat epicentre
1605 1952 1605 1952 + cds redF epicentre
2336 2953 2336 2953 + rep_origin oriV epicentre
2953 3007 2953 3007 + rep_origin ori2 epicentre
3347 4102 3347 4102 + cds repE epicentre
4681 5856 4681 5856 + cds parA epicentre
5856 6827 5856 6827 + cds parB epicentre
6900 7417 6900 7417 + repeat_region parC epicentre
7633 8031 7633 8031 + misc_binding cos epicentre
8049 8082 8049 8082 + misc_recomb loxP epicentre
8182 8416 8182 8416 + promoter 3xP3 epicentre
8417 9132 8417 9132 + gene DsRed epicentre
8452 9132 8452 9132 + cds DsRed epicentre
9284 9334 9284 9334 + terminator SV40 epicentre
9408 9630 9408 9630 - cds LacZ epicentre
9559 9576 9559 9576 + primer_bind T7 epicentre
9610 9627 9610 9627 + primer_bind CC2_fwd epicentre
dmel-5.43-X
13180063 13181774 11505 13216 - gene CG15743 coding_transcript
13156905 13179354 13925 37436 + gene HDAC4 coding_transcript
13156905 13179354 13925 37436 + mrna FBtr0301298 coding_transcript
13157788 13179354 13925 36553 + mrna FBtr0301299 coding_transcript
13158736 13179354 13925 35605 + mrna FBtr0308576 coding_transcript
13179236 13179354 13925 14043 + exon coding_transcript
13179236 13179354 13925 14043 + five_prime_utr coding_transcript
13179236 13179354 13925 14043 + exon coding_transcript
13179236 13179354 13925 14043 + five_prime_utr coding_transcript
13179236 13179354 13925 14043 + exon coding_transcript
13179236 13179354 13925 14043 + five_prime_utr coding_transcript
13176263 13179235 14044 17016 + intron coding_transcript
13176263 13179235 14044 17016 + intron coding_transcript
13178996 13179235 14044 14283 + intron coding_transcript
13178925 13178995 14284 14354 + exon coding_transcript
13178925 13178995 14284 14354 + five_prime_utr coding_transcript
13176263 13178924 14355 17016 + intron coding_transcript
13176199 13176262 17017 17080 + exon coding_transcript
13176199 13176262 17017 17080 + exon coding_transcript
13176199 13176262 17017 17080 + exon coding_transcript
13176233 13176262 17017 17046 + five_prime_utr coding_transcript
13176233 13176262 17017 17046 + five_prime_utr coding_transcript
13176233 13176262 17017 17046 + five_prime_utr coding_transcript
13176199 13176232 17047 17080 + cds coding_transcript
13176199 13176232 17047 17080 + cds coding_transcript
13176199 13176232 17047 17080 + cds coding_transcript
13170581 13176198 17081 22698 + intron coding_transcript
13170581 13176198 17081 22698 + intron coding_transcript
13170581 13176198 17081 22698 + intron coding_transcript
13170468 13170580 22699 22811 + exon coding_transcript
13170468 13170580 22699 22811 + cds coding_transcript
13170468 13170580 22699 22811 + exon coding_transcript
13170468 13170580 22699 22811 + cds coding_transcript
13170468 13170580 22699 22811 + exon coding_transcript
13170468 13170580 22699 22811 + cds coding_transcript
13165623 13170467 22812 27656 + intron coding_transcript
13165623 13170467 22812 27656 + intron coding_transcript
13165623 13170467 22812 27656 + intron coding_transcript
13157788 13166777 26502 36553 + mrna FBtr0073798 coding_transcript
13166435 13166777 26502 26844 + exon coding_transcript
13166435 13166777 26502 26844 + five_prime_utr coding_transcript
13165623 13166434 26845 27656 + intron coding_transcript
13165515 13165622 27657 27764 + exon coding_transcript
13165515 13165622 27657 27764 + cds coding_transcript
13165515 13165622 27657 27764 + exon coding_transcript
13165515 13165622 27657 27764 + cds coding_transcript
13165515 13165622 27657 27764 + exon coding_transcript
13165515 13165622 27657 27764 + exon coding_transcript
13165515 13165622 27657 27764 + cds coding_transcript
13165557 13165622 27657 27722 + five_prime_utr coding_transcript
13165515 13165556 27723 27764 + cds coding_transcript
13164646 13165514 27765 28633 + intron coding_transcript
13164676 13165514 27765 28603 + intron coding_transcript
13164676 13165514 27765 28603 + intron coding_transcript
13164676 13165514 27765 28603 + intron coding_transcript
13164424 13164675 28604 28855 + exon coding_transcript
13164424 13164675 28604 28855 + cds coding_transcript
13164424 13164675 28604 28855 + exon coding_transcript
13164424 13164675 28604 28855 + cds coding_transcript
13164424 13164675 28604 28855 + exon coding_transcript
13164424 13164675 28604 28855 + cds coding_transcript
13164424 13164645 28634 28855 + exon coding_transcript
13164424 13164645 28634 28855 + cds coding_transcript
13164354 13164423 28856 28925 + intron coding_transcript
13164354 13164423 28856 28925 + intron coding_transcript
13164354 13164423 28856 28925 + intron coding_transcript
13164354 13164423 28856 28925 + intron coding_transcript
13164280 13164353 28926 28999 + exon coding_transcript
13164280 13164353 28926 28999 + cds coding_transcript
13164280 13164353 28926 28999 + exon coding_transcript
13164280 13164353 28926 28999 + cds coding_transcript
13164280 13164353 28926 28999 + exon coding_transcript
13164280 13164353 28926 28999 + cds coding_transcript
13164280 13164353 28926 28999 + exon coding_transcript
13164280 13164353 28926 28999 + cds coding_transcript
13163992 13164279 29000 29287 + intron coding_transcript
13163992 13164279 29000 29287 + intron coding_transcript
13163992 13164279 29000 29287 + intron coding_transcript
13163992 13164279 29000 29287 + intron coding_transcript
13163861 13163991 29288 29418 + exon coding_transcript
13163861 13163991 29288 29418 + cds coding_transcript
13163861 13163991 29288 29418 + exon coding_transcript
13163861 13163991 29288 29418 + cds coding_transcript
13163861 13163991 29288 29418 + exon coding_transcript
13163861 13163991 29288 29418 + cds coding_transcript
13163861 13163991 29288 29418 + exon coding_transcript
13163861 13163991 29288 29418 + cds coding_transcript
13162296 13163860 29419 30983 + intron coding_transcript
13162874 13163860 29419 30405 + intron coding_transcript
13162874 13163860 29419 30405 + intron coding_transcript
13162874 13163860 29419 30405 + intron coding_transcript
13162727 13162873 30406 30552 + exon coding_transcript
13162727 13162873 30406 30552 + cds coding_transcript
13162727 13162873 30406 30552 + exon coding_transcript
13162727 13162873 30406 30552 + cds coding_transcript
13162727 13162873 30406 30552 + exon coding_transcript
13162727 13162873 30406 30552 + cds coding_transcript
13162296 13162726 30553 30983 + intron coding_transcript
13162296 13162726 30553 30983 + intron coding_transcript
13162296 13162726 30553 30983 + intron coding_transcript
13161355 13162295 30984 31924 + exon coding_transcript
13161355 13162295 30984 31924 + cds coding_transcript
13161355 13162295 30984 31924 + exon coding_transcript
13161355 13162295 30984 31924 + cds coding_transcript
13161355 13162295 30984 31924 + exon coding_transcript
13161355 13162295 30984 31924 + cds coding_transcript
13161355 13162295 30984 31924 + exon coding_transcript
13161355 13162295 30984 31924 + cds coding_transcript
13161288 13161354 31925 31991 + intron coding_transcript
13161288 13161354 31925 31991 + intron coding_transcript
13161288 13161354 31925 31991 + intron coding_transcript
13161288 13161354 31925 31991 + intron coding_transcript
13160073 13161287 31992 33206 + exon coding_transcript
13160073 13161287 31992 33206 + cds coding_transcript
13160073 13161287 31992 33206 + exon coding_transcript
13160073 13161287 31992 33206 + cds coding_transcript
13160073 13161287 31992 33206 + exon coding_transcript
13160073 13161287 31992 33206 + cds coding_transcript
13160073 13161287 31992 33206 + exon coding_transcript
13160073 13161287 31992 33206 + cds coding_transcript
13159991 13160072 33207 33288 + intron coding_transcript
13159991 13160072 33207 33288 + intron coding_transcript
13159991 13160072 33207 33288 + intron coding_transcript
13159991 13160072 33207 33288 + intron coding_transcript
13159871 13159990 33289 33408 + exon coding_transcript
13159871 13159990 33289 33408 + cds coding_transcript
13159871 13159990 33289 33408 + exon coding_transcript
13159871 13159990 33289 33408 + cds coding_transcript
13159871 13159990 33289 33408 + exon coding_transcript
13159871 13159990 33289 33408 + cds coding_transcript
13159871 13159990 33289 33408 + exon coding_transcript
13159871 13159990 33289 33408 + cds coding_transcript
13159801 13159870 33409 33478 + intron coding_transcript
13159801 13159870 33409 33478 + intron coding_transcript
13159801 13159870 33409 33478 + intron coding_transcript
13159801 13159870 33409 33478 + intron coding_transcript
13159366 13159800 33479 33913 + exon coding_transcript
13159366 13159800 33479 33913 + cds coding_transcript
13159366 13159800 33479 33913 + exon coding_transcript
13159366 13159800 33479 33913 + cds coding_transcript
13159366 13159800 33479 33913 + exon coding_transcript
13159366 13159800 33479 33913 + cds coding_transcript
13159366 13159800 33479 33913 + exon coding_transcript
13159366 13159800 33479 33913 + cds coding_transcript
13159297 13159365 33914 33982 + intron coding_transcript
13159297 13159365 33914 33982 + intron coding_transcript
13159297 13159365 33914 33982 + intron coding_transcript
13159297 13159365 33914 33982 + intron coding_transcript
13159163 13159296 33983 34116 + exon coding_transcript
13159163 13159296 33983 34116 + cds coding_transcript
13159163 13159296 33983 34116 + exon coding_transcript
13159163 13159296 33983 34116 + cds coding_transcript
13159163 13159296 33983 34116 + exon coding_transcript
13159163 13159296 33983 34116 + cds coding_transcript
13159163 13159296 33983 34116 + exon coding_transcript
13159163 13159296 33983 34116 + cds coding_transcript
13159070 13159162 34117 34209 + intron coding_transcript
13159070 13159162 34117 34209 + intron coding_transcript
13159070 13159162 34117 34209 + intron coding_transcript
13159070 13159162 34117 34209 + intron coding_transcript
13156905 13159069 34210 37436 + exon coding_transcript
13157788 13159069 34210 36553 + exon coding_transcript
13157788 13159069 34210 36553 + exon coding_transcript
13158736 13159069 34210 35605 + exon coding_transcript
13159015 13159069 34210 35326 + cds coding_transcript
13159015 13159069 34210 35326 + cds coding_transcript
13159015 13159069 34210 35326 + cds coding_transcript
13159015 13159069 34210 35326 + cds coding_transcript
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG
1482 1541 34262 34321 + cds 2xTY1 CLC
1548 2264 34328 35044 + cds SGFP CLC
2271 2312 35051 35092 + cds V5 CLC
2313 2336 35093 35116 + cds Precision cut site CLC
2337 2357 35117 35137 + cds TEV CLC
2358 2429 35138 35209 + cds BLRP CLC
3813 3846 35217 35250 + misc_recomb FRT CLC
dmel-5.43-X
13156905 13159014 35327 37436 + three_prime_utr coding_transcript
13157788 13159014 35327 36553 + three_prime_utr coding_transcript
13157788 13159014 35327 36553 + three_prime_utr coding_transcript
13158736 13159014 35327 35605 + three_prime_utr coding_transcript
13153030 13156521 37820 41311 - gene comt coding_transcript
13151425 13152528 41813 42916 + gene CG15742 coding_transcript

Sets(click to hide details)

Oligos(click to hide details)

Name/Sequence Export
HDAC4[34261]::S000169_fly_pretag_rev
GCCACGCCCACCGCCTCCTCTTCCGCAATATACGTCTGCATCGCCTTCTActtgtcgtcgtcatccttgtagtca
 fasta Fasta
HDAC4[34261]::S000169_fly_pretag_fwd
CTCTATCCCGCGATGATTCCGAGGAGCCGATGGATCAGGATGAAACCAAAgaagtgcataccaatcaggacccgc
 fasta Fasta