Clone: 8137439615386962 A02
Tagged gene: egr
Identifier: FBgn0033483
| Clone | FlyFos019988(pRedFlp-Hgr)(egr[23929]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | good | [view] |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 5972774 | 5983921 | 11449 | 22596 | - | gene | CG2269 | coding_transcript | |
| 5972947 | 5974568 | 20802 | 22423 | + | gene | sut4 | coding_transcript | |
| 5965870 | 5971715 | 23655 | 30562 | - | gene | egr | coding_transcript | |
| 5965870 | 5971715 | 23655 | 30562 | - | mrna | FBtr0088406 | coding_transcript | |
| 5971079 | 5971715 | 23655 | 25353 | - | exon | coding_transcript | ||
| 5971444 | 5971715 | 23655 | 23926 | - | three_prime_utr | coding_transcript | ||
| 5965870 | 5971690 | 23680 | 30562 | - | mrna | FBtr0088405 | coding_transcript | |
| 5971079 | 5971690 | 23680 | 25353 | - | exon | coding_transcript | ||
| 5971444 | 5971690 | 23680 | 23926 | - | three_prime_utr | coding_transcript | ||
| 5971079 | 5971443 | 23927 | 25353 | - | cds | coding_transcript | ||
| 5971079 | 5971443 | 23927 | 25353 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 24003 | 24036 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 24044 | 24115 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 24116 | 24136 | - | cds | TEV | CLC | |
| 2313 | 2336 | 24137 | 24160 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 24161 | 24202 | - | cds | V5 | CLC | |
| 1548 | 2264 | 24209 | 24925 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 24932 | 24991 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 5970999 | 5971078 | 25354 | 25433 | - | intron | coding_transcript | ||
| 5970999 | 5971078 | 25354 | 25433 | - | intron | coding_transcript | ||
| 5970909 | 5970998 | 25434 | 25523 | - | exon | coding_transcript | ||
| 5970909 | 5970998 | 25434 | 25523 | - | cds | coding_transcript | ||
| 5970927 | 5970998 | 25434 | 25505 | - | exon | coding_transcript | ||
| 5970927 | 5970998 | 25434 | 25505 | - | cds | coding_transcript | ||
| 5970832 | 5970926 | 25506 | 25600 | - | intron | coding_transcript | ||
| 5970832 | 5970908 | 25524 | 25600 | - | intron | coding_transcript | ||
| 5970767 | 5970831 | 25601 | 25665 | - | exon | coding_transcript | ||
| 5970767 | 5970831 | 25601 | 25665 | - | cds | coding_transcript | ||
| 5970767 | 5970831 | 25601 | 25665 | - | exon | coding_transcript | ||
| 5970767 | 5970831 | 25601 | 25665 | - | cds | coding_transcript | ||
| 5970640 | 5970766 | 25666 | 25792 | - | intron | coding_transcript | ||
| 5970640 | 5970766 | 25666 | 25792 | - | intron | coding_transcript | ||
| 5970535 | 5970639 | 25793 | 25897 | - | exon | coding_transcript | ||
| 5970535 | 5970639 | 25793 | 25897 | - | cds | coding_transcript | ||
| 5970535 | 5970639 | 25793 | 25897 | - | exon | coding_transcript | ||
| 5970535 | 5970639 | 25793 | 25897 | - | cds | coding_transcript | ||
| 5970473 | 5970534 | 25898 | 25959 | - | intron | coding_transcript | ||
| 5970473 | 5970534 | 25898 | 25959 | - | intron | coding_transcript | ||
| 5970147 | 5970472 | 25960 | 26285 | - | exon | coding_transcript | ||
| 5970147 | 5970472 | 25960 | 26285 | - | cds | coding_transcript | ||
| 5970147 | 5970472 | 25960 | 26285 | - | exon | coding_transcript | ||
| 5970147 | 5970472 | 25960 | 26285 | - | cds | coding_transcript | ||
| 5969138 | 5970146 | 26286 | 27294 | - | intron | coding_transcript | ||
| 5969138 | 5970146 | 26286 | 27294 | - | intron | coding_transcript | ||
| 5969012 | 5969137 | 27295 | 27420 | - | exon | coding_transcript | ||
| 5969012 | 5969137 | 27295 | 27420 | - | cds | coding_transcript | ||
| 5969012 | 5969137 | 27295 | 27420 | - | exon | coding_transcript | ||
| 5969012 | 5969137 | 27295 | 27420 | - | cds | coding_transcript | ||
| 5966688 | 5969011 | 27421 | 29744 | - | intron | coding_transcript | ||
| 5966688 | 5969011 | 27421 | 29744 | - | intron | coding_transcript | ||
| 5965870 | 5966687 | 29745 | 30562 | - | exon | coding_transcript | ||
| 5965870 | 5966687 | 29745 | 30562 | - | exon | coding_transcript | ||
| 5966517 | 5966687 | 29745 | 29915 | - | cds | coding_transcript | ||
| 5966517 | 5966687 | 29745 | 29915 | - | cds | coding_transcript | ||
| 5965870 | 5966516 | 29916 | 30562 | - | five_prime_utr | coding_transcript | ||
| 5965870 | 5966516 | 29916 | 30562 | - | five_prime_utr | coding_transcript | ||
| 5958476 | 5963147 | 33285 | 37956 | + | gene | CG1371 | coding_transcript | |
| 5956614 | 5958572 | 37860 | 39818 | - | gene | CG12920 | coding_transcript | |
| 5954722 | 5956206 | 40226 | 41710 | + | gene | cdc2rk | coding_transcript | |
| 5954154 | 5954747 | 41685 | 42278 | - | gene | mRpL42 | coding_transcript | |
| 5950890 | 5954060 | 42372 | 45542 | + | gene | CG2292 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
egr[23929]::S000169_fly_pretag_rev
AGCTTAAACTGGTATTCCATCTTCTGACCGGGGATAATCTCTCCAATTTActtgtcgtcgtcatccttgtagtca
|
Fasta
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|
egr[23929]::S000169_fly_pretag_fwd
CAGTTCTGCGGGAGGGAAACAACCGAAGCTACTTTGGCATCTTCAAGGTGgaagtgcataccaatcaggacccgc
|
Fasta
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