Clone: 16945536021279262 E08
Tagged gene: otp
Identifier: FBgn0015524
| Clone | FlyFos031375(pRedFlp-Hgr)(otp[49938]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 16797209 | 16798313 | 23625 | 24729 | - | gene | CG9235 | coding_transcript | |
| 16771116 | 16790900 | 31038 | 51884 | + | gene | otp | coding_transcript | |
| 16771116 | 16790900 | 31038 | 51884 | + | mrna | FBtr0290289 | coding_transcript | |
| 16790291 | 16790900 | 31038 | 31647 | + | exon | coding_transcript | ||
| 16790291 | 16790900 | 31038 | 31647 | + | five_prime_utr | coding_transcript | ||
| 16789799 | 16790290 | 31648 | 32139 | + | intron | coding_transcript | ||
| 16789533 | 16789798 | 32140 | 32405 | + | exon | coding_transcript | ||
| 16789564 | 16789798 | 32140 | 32374 | + | five_prime_utr | coding_transcript | ||
| 16789533 | 16789563 | 32375 | 32405 | + | cds | coding_transcript | ||
| 16784276 | 16789532 | 32406 | 37662 | + | intron | coding_transcript | ||
| 16771116 | 16785088 | 36850 | 51884 | + | mrna | FBtr0110772 | coding_transcript | |
| 16784704 | 16785088 | 36850 | 37234 | + | exon | coding_transcript | ||
| 16784704 | 16785088 | 36850 | 37234 | + | five_prime_utr | coding_transcript | ||
| 16784276 | 16784703 | 37235 | 37662 | + | intron | coding_transcript | ||
| 16783980 | 16784275 | 37663 | 37958 | + | exon | coding_transcript | ||
| 16783980 | 16784275 | 37663 | 37958 | + | cds | coding_transcript | ||
| 16783980 | 16784275 | 37663 | 37958 | + | exon | coding_transcript | ||
| 16783998 | 16784275 | 37663 | 37940 | + | five_prime_utr | coding_transcript | ||
| 16783980 | 16783997 | 37941 | 37958 | + | cds | coding_transcript | ||
| 16783351 | 16783979 | 37959 | 38587 | + | intron | coding_transcript | ||
| 16783372 | 16783979 | 37959 | 38566 | + | intron | coding_transcript | ||
| 16783216 | 16783371 | 38567 | 38722 | + | exon | coding_transcript | ||
| 16783216 | 16783371 | 38567 | 38722 | + | cds | coding_transcript | ||
| 16783216 | 16783350 | 38588 | 38722 | + | exon | coding_transcript | ||
| 16783216 | 16783350 | 38588 | 38722 | + | cds | coding_transcript | ||
| 16774233 | 16783215 | 38723 | 47705 | + | intron | coding_transcript | ||
| 16774233 | 16783215 | 38723 | 47705 | + | intron | coding_transcript | ||
| 16774028 | 16774232 | 47706 | 47910 | + | exon | coding_transcript | ||
| 16774028 | 16774232 | 47706 | 47910 | + | cds | coding_transcript | ||
| 16774028 | 16774232 | 47706 | 47910 | + | exon | coding_transcript | ||
| 16774028 | 16774232 | 47706 | 47910 | + | cds | coding_transcript | ||
| 16772874 | 16774027 | 47911 | 49064 | + | intron | coding_transcript | ||
| 16773912 | 16774027 | 47911 | 48026 | + | intron | coding_transcript | ||
| 16773786 | 16773911 | 48027 | 48152 | + | exon | coding_transcript | ||
| 16773786 | 16773911 | 48027 | 48152 | + | cds | coding_transcript | ||
| 16772874 | 16773785 | 48153 | 49064 | + | intron | coding_transcript | ||
| 16772707 | 16772873 | 49065 | 49231 | + | exon | coding_transcript | ||
| 16772707 | 16772873 | 49065 | 49231 | + | cds | coding_transcript | ||
| 16772707 | 16772873 | 49065 | 49231 | + | exon | coding_transcript | ||
| 16772707 | 16772873 | 49065 | 49231 | + | cds | coding_transcript | ||
| 16772267 | 16772706 | 49232 | 49671 | + | intron | coding_transcript | ||
| 16772267 | 16772706 | 49232 | 49671 | + | intron | coding_transcript | ||
| 16771116 | 16772266 | 49672 | 51884 | + | exon | coding_transcript | ||
| 16771116 | 16772266 | 49672 | 51884 | + | exon | coding_transcript | ||
| 16771997 | 16772266 | 49672 | 51003 | + | cds | coding_transcript | ||
| 16771997 | 16772266 | 49672 | 51003 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 49939 | 49998 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 50005 | 50721 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 50728 | 50769 | + | cds | V5 | CLC | |
| 2313 | 2336 | 50770 | 50793 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 50794 | 50814 | + | cds | TEV | CLC | |
| 2358 | 2429 | 50815 | 50886 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 50894 | 50927 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-2R | ||||||||
| 16771116 | 16771996 | 51004 | 51884 | + | three_prime_utr | coding_transcript | ||
| 16771116 | 16771996 | 51004 | 51884 | + | three_prime_utr | coding_transcript | ||
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
otp[49938]::S000169_fly_pretag_rev
GCTTTTCACCCGTAATCCGAAAAGCTTTCGAAGCTTTTCAACAAATTTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
otp[49938]::S000169_fly_pretag_fwd
TGGCGCCACACAACTACGAACACTACAATTCGAATTCCAATTCGGTCTACgaagtgcataccaatcaggacccgc
|
Fasta
|