Clone: 851890458048955 H09
Tagged gene: Ubpy
Identifier: FBgn0038862
| Clone | FlyFos031958(pRedFlp-Hgr)(Ubpy[42967]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 16991220 | 16993927 | 12610 | 15317 | + | gene | Snmp1 | coding_transcript | |
| 16989512 | 16990798 | 15739 | 17025 | - | gene | CG5810 | coding_transcript | |
| 16984960 | 16986815 | 19722 | 21577 | + | gene | CG10824 | coding_transcript | |
| 16963992 | 16966087 | 40450 | 42545 | - | gene | CG5802 | coding_transcript | |
| 16959984 | 16963936 | 42601 | 47615 | - | gene | Ubpy | coding_transcript | |
| 16959984 | 16963936 | 42601 | 47615 | - | mrna | FBtr0084016 | coding_transcript | |
| 16962204 | 16963936 | 42601 | 45395 | - | mrna | FBtr0304714 | coding_transcript | |
| 16963242 | 16963936 | 42601 | 44357 | - | exon | coding_transcript | ||
| 16963242 | 16963936 | 42601 | 44357 | - | exon | coding_transcript | ||
| 16963573 | 16963936 | 42601 | 42964 | - | three_prime_utr | coding_transcript | ||
| 16963573 | 16963936 | 42601 | 42964 | - | three_prime_utr | coding_transcript | ||
| 16963242 | 16963572 | 42965 | 44357 | - | cds | coding_transcript | ||
| 16963242 | 16963572 | 42965 | 44357 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 43041 | 43074 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 43082 | 43153 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 43154 | 43174 | - | cds | TEV | CLC | |
| 2313 | 2336 | 43175 | 43198 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 43199 | 43240 | - | cds | V5 | CLC | |
| 1548 | 2264 | 43247 | 43963 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 43970 | 44029 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 16963186 | 16963241 | 44358 | 44413 | - | intron | coding_transcript | ||
| 16963186 | 16963241 | 44358 | 44413 | - | intron | coding_transcript | ||
| 16962731 | 16963185 | 44414 | 44868 | - | exon | coding_transcript | ||
| 16962731 | 16963185 | 44414 | 44868 | - | cds | coding_transcript | ||
| 16962731 | 16963185 | 44414 | 44868 | - | exon | coding_transcript | ||
| 16962731 | 16963185 | 44414 | 44868 | - | cds | coding_transcript | ||
| 16962668 | 16962730 | 44869 | 44931 | - | intron | coding_transcript | ||
| 16962668 | 16962730 | 44869 | 44931 | - | intron | coding_transcript | ||
| 16962437 | 16962667 | 44932 | 45162 | - | exon | coding_transcript | ||
| 16962437 | 16962667 | 44932 | 45162 | - | cds | coding_transcript | ||
| 16962437 | 16962667 | 44932 | 45162 | - | exon | coding_transcript | ||
| 16962437 | 16962667 | 44932 | 45162 | - | cds | coding_transcript | ||
| 16962039 | 16962436 | 45163 | 45560 | - | intron | coding_transcript | ||
| 16962369 | 16962436 | 45163 | 45230 | - | intron | coding_transcript | ||
| 16962204 | 16962368 | 45231 | 45395 | - | exon | coding_transcript | ||
| 16962282 | 16962368 | 45231 | 45317 | - | cds | coding_transcript | ||
| 16962204 | 16962281 | 45318 | 45395 | - | five_prime_utr | coding_transcript | ||
| 16961595 | 16962038 | 45561 | 46004 | - | exon | coding_transcript | ||
| 16961595 | 16962038 | 45561 | 46004 | - | cds | coding_transcript | ||
| 16961540 | 16961594 | 46005 | 46059 | - | intron | coding_transcript | ||
| 16961057 | 16961539 | 46060 | 46542 | - | exon | coding_transcript | ||
| 16961057 | 16961539 | 46060 | 46542 | - | cds | coding_transcript | ||
| 16961002 | 16961056 | 46543 | 46597 | - | intron | coding_transcript | ||
| 16960839 | 16961001 | 46598 | 46760 | - | exon | coding_transcript | ||
| 16960839 | 16961001 | 46598 | 46760 | - | cds | coding_transcript | ||
| 16960780 | 16960838 | 46761 | 46819 | - | intron | coding_transcript | ||
| 16960291 | 16960779 | 46820 | 47308 | - | exon | coding_transcript | ||
| 16960291 | 16960779 | 46820 | 47308 | - | cds | coding_transcript | ||
| 16960228 | 16960290 | 47309 | 47371 | - | intron | coding_transcript | ||
| 16959984 | 16960227 | 47372 | 47615 | - | exon | coding_transcript | ||
| 16960133 | 16960227 | 47372 | 47466 | - | cds | coding_transcript | ||
| 16959984 | 16960132 | 47467 | 47615 | - | five_prime_utr | coding_transcript | ||
| 16958456 | 16959599 | 48000 | 49143 | + | gene | CG7009 | coding_transcript | |
| 16955941 | 16958442 | 49157 | 51658 | - | gene | CG10825 | coding_transcript | |
| 16954672 | 16955439 | 52160 | 52927 | + | gene | Obp93a | coding_transcript | |
| 16953295 | 16955323 | 52276 | 54304 | - | gene | CG5793 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Ubpy[42967]::S000169_fly_pretag_fwd
CTGCATACATTCTTTTCTACACCTGGCTGCCACCCATGCAGGTGCCTCTGgaagtgcataccaatcaggacccgc
|
Fasta
|
|
Ubpy[42967]::S000169_fly_pretag_rev
AATTAAAACGAAAGGGGTAAAAACCGAAAGGAAACCGAGCGAAGCGTCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|