Clone: 851890458048955 H04
Tagged gene: Rad9
Identifier: FBgn0025807
| Clone | FlyFos031885(pRedFlp-Hgr)(Rad9[14264]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 18859325 | 18860652 | 9808 | 11135 | + | gene | CG14074 | coding_transcript | |
| 18860877 | 18862319 | 11360 | 12802 | + | gene | dysb | coding_transcript | |
| 18862395 | 18863157 | 12878 | 13640 | + | gene | CG6852 | coding_transcript | |
| 18863144 | 18865643 | 13627 | 17188 | - | gene | Rad9 | coding_transcript | |
| 18863144 | 18865643 | 13627 | 17188 | - | mrna | FBtr0075080 | coding_transcript | |
| 18863144 | 18863452 | 13627 | 13935 | - | exon | coding_transcript | ||
| 18863144 | 18863452 | 13627 | 13935 | - | three_prime_utr | coding_transcript | ||
| 18863332 | 18863997 | 13815 | 15542 | + | gene | blos3 | coding_transcript | |
| 18863332 | 18863997 | 13815 | 15542 | + | mrna | FBtr0112449 | coding_transcript | |
| 18863332 | 18863470 | 13815 | 13953 | + | exon | coding_transcript | ||
| 18863332 | 18863407 | 13815 | 13890 | + | five_prime_utr | coding_transcript | ||
| 18863408 | 18863470 | 13891 | 13953 | + | cds | coding_transcript | ||
| 18863453 | 18863747 | 13936 | 14230 | - | intron | coding_transcript | ||
| 18863471 | 18863527 | 13954 | 14010 | + | intron | coding_transcript | ||
| 18863528 | 18863660 | 14011 | 14143 | + | exon | coding_transcript | ||
| 18863528 | 18863660 | 14011 | 14143 | + | cds | coding_transcript | ||
| 18863661 | 18863713 | 14144 | 14196 | + | intron | coding_transcript | ||
| 18863714 | 18863997 | 14197 | 15542 | + | exon | coding_transcript | ||
| 18863714 | 18863952 | 14197 | 15497 | + | cds | coding_transcript | ||
| 18863748 | 18863880 | 14231 | 15425 | - | exon | coding_transcript | ||
| 18863748 | 18863778 | 14231 | 14261 | - | three_prime_utr | coding_transcript | ||
| 18863779 | 18863880 | 14262 | 15425 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 14338 | 14371 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 14379 | 14450 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 14451 | 14471 | - | cds | TEV | CLC | |
| 2313 | 2336 | 14472 | 14495 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 14496 | 14537 | - | cds | V5 | CLC | |
| 1548 | 2264 | 14544 | 15260 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 15267 | 15326 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 18863881 | 18864097 | 15426 | 15642 | - | intron | coding_transcript | ||
| 18863953 | 18863997 | 15498 | 15542 | + | three_prime_utr | coding_transcript | ||
| 18863996 | 18865643 | 15541 | 17188 | - | mrna | FBtr0112917 | coding_transcript | |
| 18863996 | 18864953 | 15541 | 16498 | - | exon | coding_transcript | ||
| 18863996 | 18864953 | 15541 | 16498 | - | cds | coding_transcript | ||
| 18864098 | 18864953 | 15643 | 16498 | - | exon | coding_transcript | ||
| 18864098 | 18864953 | 15643 | 16498 | - | cds | coding_transcript | ||
| 18864954 | 18865061 | 16499 | 16606 | - | intron | coding_transcript | ||
| 18864954 | 18865061 | 16499 | 16606 | - | intron | coding_transcript | ||
| 18865062 | 18865213 | 16607 | 16758 | - | exon | coding_transcript | ||
| 18865062 | 18865213 | 16607 | 16758 | - | cds | coding_transcript | ||
| 18865062 | 18865213 | 16607 | 16758 | - | exon | coding_transcript | ||
| 18865062 | 18865213 | 16607 | 16758 | - | cds | coding_transcript | ||
| 18865214 | 18865267 | 16759 | 16812 | - | intron | coding_transcript | ||
| 18865214 | 18865267 | 16759 | 16812 | - | intron | coding_transcript | ||
| 18865268 | 18865494 | 16813 | 17039 | - | exon | coding_transcript | ||
| 18865268 | 18865494 | 16813 | 17039 | - | cds | coding_transcript | ||
| 18865268 | 18865494 | 16813 | 17039 | - | exon | coding_transcript | ||
| 18865268 | 18865494 | 16813 | 17039 | - | cds | coding_transcript | ||
| 18865495 | 18865550 | 17040 | 17095 | - | intron | coding_transcript | ||
| 18865495 | 18865550 | 17040 | 17095 | - | intron | coding_transcript | ||
| 18865551 | 18865643 | 17096 | 17188 | - | exon | coding_transcript | ||
| 18865551 | 18865643 | 17096 | 17188 | - | exon | coding_transcript | ||
| 18865551 | 18865584 | 17096 | 17129 | - | cds | coding_transcript | ||
| 18865551 | 18865584 | 17096 | 17129 | - | cds | coding_transcript | ||
| 18865585 | 18865643 | 17130 | 17188 | - | five_prime_utr | coding_transcript | ||
| 18865585 | 18865643 | 17130 | 17188 | - | five_prime_utr | coding_transcript | ||
| 18865847 | 18871352 | 17392 | 22897 | + | gene | Ugt | coding_transcript | |
| 18871350 | 18883582 | 22895 | 35127 | - | gene | CG3961 | coding_transcript | |
| 18885483 | 18886378 | 37028 | 37923 | + | gene | CG11637 | coding_transcript | |
| 18886220 | 18891390 | 37765 | 42935 | - | gene | CG3902 | coding_transcript | |
| 18892174 | 18893024 | 43719 | 44569 | + | gene | RpL26 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Rad9[14264]::S000169_fly_pretag_fwd
AGACTATGTTGCGACTTGATGAGCATTTGATCAGTGGTTACGAGCTGCTTgaagtgcataccaatcaggacccgc
|
Fasta
|
|
Rad9[14264]::S000169_fly_pretag_rev
TTTGGAGATCCCTTACCGCTTTCACTCGCAGCTTTGTGTTGAGTGCATCActtgtcgtcgtcatccttgtagtca
|
Fasta
|