Clone: 3439887580579347 H05
Tagged gene: KLHL18
Identifier: FBgn0037978
| Clone | FlyFos031763(pRedFlp-Hgr)(KLHL18[39038]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| Whole tag sequencing | no data | download [show/hide details] |
GENOME<<>>TAG TAG<<>>GENOME PREDICTED TACAGTCGAGGTGTACGATCCGGAGACCGACAAATGGACCTTTATGCCGCCCATGTGCGCACACAGTGGTGGTGTCGGAGCCGGGGTCATACGGATCGAGGAAGTGCATACCAATCAGGACCCGCTGGACGAGGTTCACACAAACCAAGATCCACTTGATGAATTCATGGTGTCCAAGGGCGAGGAGCTGTTCACCGGCGTGGTGCCCATCCTGGTGGAGCTGGATGGCGACGTGAACGGCCACAAGTTCAGCGTGCGCGGCGAGGGCGAGGGCGACGCCACCAACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTGGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGATCACATGAAGCAGCACGATTTCTTCAAGAGCGCCATGCCCGAGGGCTACGTGCAGGAGCGCACCATCAGCTTCAAGGATGACGGCACCTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGATACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGATTTCAAGGAGGATGGCAACATCCTGGGCCACAAGCTGGAGTACAACTTCAACAGCCACAACGTGTACATCACCGCCGATAAGCAGAAGAACGGCATCAAGGCCAACTTCAAGATCCGCCACAATGTGGAGGATGGCTCCGTGCAGCTGGCCGATCACTACCAGCAGAACACCCCCATCGGCGACGGCCCAGTGCTGCTGCCCGATAACCACTACCTGAGCACCCAGAGCGTGCTGTCCAAGGACCCCAACGAGAAGCGCGATCACATGGTGCTGCTGGAGTTCGTGACCGCCGCCGGCATCACCCTGGGCATGGATGAGCTGTACAAGCTCGAGGGCAAGCCCATCCCCAACCCCCTGCTGGGCCTGGATAGCACCCTGGAGGTGCTGTTCCAGGGCCCCGAGAACCTGTACTTCCAGGGCATGGCCAGCAGCCTGCGCCAGATCCTGGATAGCCAGAAGATGGAGTGGCGCAGCAACGCCGGCGGCAGCGGATCCTCGGGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGTCGACAGATTATAAAGACCACGATGGAGACTATAAAGATCATGACATTGACTACAAGGATGACGACGACAAGTAACCCACTCGATTCGCCTGCCAAACCCGTTTCTCTAGCCACACTCGTCTTAGGTAATTTATGTGAATTGAATCGATATAGTTTAGCCTAGATATGATTG COVERAGE 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
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Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 7806426 | 7807746 | 11327 | 12647 | - | gene | CG12224 | coding_transcript | |
| 7808820 | 7810263 | 13721 | 15164 | - | gene | CG3397 | coding_transcript | |
| 7810584 | 7819037 | 15485 | 23938 | - | gene | mfas | coding_transcript | |
| 7819897 | 7831194 | 24798 | 36095 | - | gene | Tk | coding_transcript | |
| 7825029 | 7829239 | 29930 | 34140 | + | gene | Ect3 | coding_transcript | |
| 7833832 | 7836152 | 38733 | 42115 | - | gene | KLHL18 | coding_transcript | |
| 7833832 | 7836152 | 38733 | 42115 | - | mrna | FBtr0082556 | coding_transcript | |
| 7833832 | 7836088 | 38733 | 42051 | - | mrna | FBtr0082557 | coding_transcript | |
| 7833832 | 7834617 | 38733 | 40580 | - | exon | coding_transcript | ||
| 7833832 | 7834617 | 38733 | 40580 | - | exon | coding_transcript | ||
| 7833832 | 7834134 | 38733 | 39035 | - | three_prime_utr | coding_transcript | ||
| 7833832 | 7834134 | 38733 | 39035 | - | three_prime_utr | coding_transcript | ||
| 7834135 | 7834617 | 39036 | 40580 | - | cds | coding_transcript | ||
| 7834135 | 7834617 | 39036 | 40580 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 39112 | 39145 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 39153 | 39224 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 39225 | 39245 | - | cds | TEV | CLC | |
| 2313 | 2336 | 39246 | 39269 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 39270 | 39311 | - | cds | V5 | CLC | |
| 1548 | 2264 | 39318 | 40034 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 40041 | 40100 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 7834618 | 7834690 | 40581 | 40653 | - | intron | coding_transcript | ||
| 7834618 | 7834690 | 40581 | 40653 | - | intron | coding_transcript | ||
| 7834691 | 7834949 | 40654 | 40912 | - | exon | coding_transcript | ||
| 7834691 | 7834949 | 40654 | 40912 | - | cds | coding_transcript | ||
| 7834691 | 7834949 | 40654 | 40912 | - | exon | coding_transcript | ||
| 7834691 | 7834949 | 40654 | 40912 | - | cds | coding_transcript | ||
| 7834950 | 7835011 | 40913 | 40974 | - | intron | coding_transcript | ||
| 7834950 | 7835011 | 40913 | 40974 | - | intron | coding_transcript | ||
| 7835012 | 7836088 | 40975 | 42051 | - | exon | coding_transcript | ||
| 7835012 | 7835886 | 40975 | 41849 | - | cds | coding_transcript | ||
| 7835012 | 7835865 | 40975 | 41828 | - | exon | coding_transcript | ||
| 7835012 | 7835865 | 40975 | 41828 | - | cds | coding_transcript | ||
| 7835866 | 7835963 | 41829 | 41926 | - | intron | coding_transcript | ||
| 7835887 | 7836088 | 41850 | 42051 | - | five_prime_utr | coding_transcript | ||
| 7835964 | 7836152 | 41927 | 42115 | - | exon | coding_transcript | ||
| 7835964 | 7836095 | 41927 | 42058 | - | cds | coding_transcript | ||
| 7836096 | 7836152 | 42059 | 42115 | - | five_prime_utr | coding_transcript | ||
| 7836504 | 7840784 | 42467 | 46747 | + | gene | CG3532 | coding_transcript | |
| 7840665 | 7842753 | 46628 | 48716 | - | gene | CG3313 | coding_transcript | |
| 7842822 | 7844272 | 48785 | 50235 | + | gene | Spt3 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
KLHL18[39038]::S000169_fly_pretag_rev
AGACGAGTGTGGCTAGAGAAACGGGTTTGGCAGGCGAATCGAGTGGGTTActtgtcgtcgtcatccttgtagtca
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Fasta
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KLHL18[39038]::S000169_fly_pretag_fwd
CCATGTGCGCACACAGTGGTGGTGTCGGAGCCGGGGTCATACGGATCGAGgaagtgcataccaatcaggacccgc
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Fasta
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