Clone: 3439887580579347 G03
Tagged gene: Sema-5c
Identifier: FBgn0250876
| Clone | FlyFos031743(pRedFlp-Hgr)(Sema-5c[30000]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| Whole tag sequencing | no data | download [show/hide details] |
GENOME<<>>TAG TAG<<>>GENOME PREDICTED CAAAGTTCTGGCCAAAACGTATATCGACTGCGAATCCGGAACGATCAAACGACAATCGGCACTGAACAATTGCCGCAGTAATATCGACGACGAGAAGTTCGAAGTGCATACCAATCAGGACCCGCTGGACGAGGTTCACACAAACCAAGATCCACTTGATGAATTCATGGTGTCCAAGGGCGAGGAGCTGTTCACCGGCGTGGTGCCCATCCTGGTGGAGCTGGATGGCGACGTGAACGGCCACAAGTTCAGCGTGCGCGGCGAGGGCGAGGGCGACGCCACCAACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTGGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGATCACATGAAGCAGCACGATTTCTTCAAGAGCGCCATGCCCGAGGGCTACGTGCAGGAGCGCACCATCAGCTTCAAGGATGACGGCACCTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGATACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGATTTCAAGGAGGATGGCAACATCCTGGGCCACAAGCTGGAGTACAACTTCAACAGCCACAACGTGTACATCACCGCCGATAAGCAGAAGAACGGCATCAAGGCCAACTTCAAGATCCGCCACAATGTGGAGGATGGCTCCGTGCAGCTGGCCGATCACTACCAGCAGAACACCCCCATCGGCGACGGCCCAGTGCTGCTGCCCGATAACCACTACCTGAGCACCCAGAGCGTGCTGTCCAAGGACCCCAACGAGAAGCGCGATCACATGGTGCTGCTGGAGTTCGTGACCGCCGCCGGCATCACCCTGGGCATGGATGAGCTGTACAAGCTCGAGGGCAAGCCCATCCCCAACCCCCTGCTGGGCCTGGATAGCACCCTGGAGGTGCTGTTCCAGGGCCCCGAGAACCTGTACTTCCAGGGCATGGCCAGCAGCCTGCGCCAGATCCTGGATAGCCAGAAGATGGAGTGGCGCAGCAACGCCGGCGGCAGCGGATCCTCGGGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGTCGACAGATTATAAAGACCACGATGGAGACTATAAAGATCATGACATTGACTACAAGGATGACGACGACAAGTAAGGAAACCCGCGATCTTCGATATCCAAAAGTGCCATCTAATGACTATGGAAATGTTACAACGAGAGAGACAAGTTTTATTTTTGCGCCAAAGCGATGC COVERAGE 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 |
||
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 12060611 | 12074927 | 16311 | 31689 | + | gene | Sema-5c | coding_transcript | |
| 12060667 | 12074927 | 16311 | 31633 | + | mrna | FBtr0300339 | coding_transcript | |
| 12074661 | 12074927 | 16311 | 16577 | + | exon | coding_transcript | ||
| 12074661 | 12074927 | 16311 | 16577 | + | five_prime_utr | coding_transcript | ||
| 12060611 | 12074885 | 16353 | 31689 | + | mrna | FBtr0076052 | coding_transcript | |
| 12074447 | 12074885 | 16353 | 16791 | + | exon | coding_transcript | ||
| 12074452 | 12074885 | 16353 | 16786 | + | five_prime_utr | coding_transcript | ||
| 12074059 | 12074660 | 16578 | 17179 | + | intron | coding_transcript | ||
| 12074447 | 12074451 | 16787 | 16791 | + | cds | coding_transcript | ||
| 12074059 | 12074446 | 16792 | 17179 | + | intron | coding_transcript | ||
| 12073895 | 12074058 | 17180 | 17343 | + | exon | coding_transcript | ||
| 12073895 | 12074058 | 17180 | 17343 | + | cds | coding_transcript | ||
| 12073895 | 12074058 | 17180 | 17343 | + | exon | coding_transcript | ||
| 12074058 | 12074058 | 17180 | 17180 | + | five_prime_utr | coding_transcript | ||
| 12073895 | 12074057 | 17181 | 17343 | + | cds | coding_transcript | ||
| 12073141 | 12073894 | 17344 | 18097 | + | intron | coding_transcript | ||
| 12073141 | 12073894 | 17344 | 18097 | + | intron | coding_transcript | ||
| 12073041 | 12073140 | 18098 | 18197 | + | exon | coding_transcript | ||
| 12073041 | 12073140 | 18098 | 18197 | + | cds | coding_transcript | ||
| 12073041 | 12073140 | 18098 | 18197 | + | exon | coding_transcript | ||
| 12073041 | 12073140 | 18098 | 18197 | + | cds | coding_transcript | ||
| 12065172 | 12073040 | 18198 | 26066 | + | intron | coding_transcript | ||
| 12065172 | 12073040 | 18198 | 26066 | + | intron | coding_transcript | ||
| 12064964 | 12065171 | 26067 | 26274 | + | exon | coding_transcript | ||
| 12064964 | 12065171 | 26067 | 26274 | + | cds | coding_transcript | ||
| 12064964 | 12065171 | 26067 | 26274 | + | exon | coding_transcript | ||
| 12064964 | 12065171 | 26067 | 26274 | + | cds | coding_transcript | ||
| 12064861 | 12064963 | 26275 | 26377 | + | intron | coding_transcript | ||
| 12064861 | 12064963 | 26275 | 26377 | + | intron | coding_transcript | ||
| 12064687 | 12064860 | 26378 | 26551 | + | exon | coding_transcript | ||
| 12064687 | 12064860 | 26378 | 26551 | + | cds | coding_transcript | ||
| 12064687 | 12064860 | 26378 | 26551 | + | exon | coding_transcript | ||
| 12064687 | 12064860 | 26378 | 26551 | + | cds | coding_transcript | ||
| 12064297 | 12064686 | 26552 | 26941 | + | intron | coding_transcript | ||
| 12064297 | 12064686 | 26552 | 26941 | + | intron | coding_transcript | ||
| 12064165 | 12064296 | 26942 | 27073 | + | exon | coding_transcript | ||
| 12064165 | 12064296 | 26942 | 27073 | + | cds | coding_transcript | ||
| 12064165 | 12064296 | 26942 | 27073 | + | exon | coding_transcript | ||
| 12064165 | 12064296 | 26942 | 27073 | + | cds | coding_transcript | ||
| 12064102 | 12064164 | 27074 | 27136 | + | intron | coding_transcript | ||
| 12064102 | 12064164 | 27074 | 27136 | + | intron | coding_transcript | ||
| 12063899 | 12064101 | 27137 | 27339 | + | exon | coding_transcript | ||
| 12063899 | 12064101 | 27137 | 27339 | + | cds | coding_transcript | ||
| 12063899 | 12064101 | 27137 | 27339 | + | exon | coding_transcript | ||
| 12063899 | 12064101 | 27137 | 27339 | + | cds | coding_transcript | ||
| 12063825 | 12063898 | 27340 | 27413 | + | intron | coding_transcript | ||
| 12063825 | 12063898 | 27340 | 27413 | + | intron | coding_transcript | ||
| 12063018 | 12063824 | 27414 | 28220 | + | exon | coding_transcript | ||
| 12063018 | 12063824 | 27414 | 28220 | + | cds | coding_transcript | ||
| 12063018 | 12063824 | 27414 | 28220 | + | exon | coding_transcript | ||
| 12063018 | 12063824 | 27414 | 28220 | + | cds | coding_transcript | ||
| 12062910 | 12063017 | 28221 | 28328 | + | intron | coding_transcript | ||
| 12062910 | 12063017 | 28221 | 28328 | + | intron | coding_transcript | ||
| 12061999 | 12062909 | 28329 | 29239 | + | exon | coding_transcript | ||
| 12061999 | 12062909 | 28329 | 29239 | + | cds | coding_transcript | ||
| 12061999 | 12062909 | 28329 | 29239 | + | exon | coding_transcript | ||
| 12061999 | 12062909 | 28329 | 29239 | + | cds | coding_transcript | ||
| 12061935 | 12061998 | 29240 | 29303 | + | intron | coding_transcript | ||
| 12061935 | 12061998 | 29240 | 29303 | + | intron | coding_transcript | ||
| 12061779 | 12061934 | 29304 | 29459 | + | exon | coding_transcript | ||
| 12061779 | 12061934 | 29304 | 29459 | + | cds | coding_transcript | ||
| 12061779 | 12061934 | 29304 | 29459 | + | exon | coding_transcript | ||
| 12061779 | 12061934 | 29304 | 29459 | + | cds | coding_transcript | ||
| 12061713 | 12061778 | 29460 | 29525 | + | intron | coding_transcript | ||
| 12061713 | 12061778 | 29460 | 29525 | + | intron | coding_transcript | ||
| 12061510 | 12061712 | 29526 | 29728 | + | exon | coding_transcript | ||
| 12061510 | 12061712 | 29526 | 29728 | + | cds | coding_transcript | ||
| 12061510 | 12061712 | 29526 | 29728 | + | exon | coding_transcript | ||
| 12061510 | 12061712 | 29526 | 29728 | + | cds | coding_transcript | ||
| 12061454 | 12061509 | 29729 | 29784 | + | intron | coding_transcript | ||
| 12061454 | 12061509 | 29729 | 29784 | + | intron | coding_transcript | ||
| 12060611 | 12061453 | 29785 | 31689 | + | exon | coding_transcript | ||
| 12060667 | 12061453 | 29785 | 31633 | + | exon | coding_transcript | ||
| 12061235 | 12061453 | 29785 | 31065 | + | cds | coding_transcript | ||
| 12061235 | 12061453 | 29785 | 31065 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 30001 | 30060 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 30067 | 30783 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 30790 | 30831 | + | cds | V5 | CLC | |
| 2313 | 2336 | 30832 | 30855 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 30856 | 30876 | + | cds | TEV | CLC | |
| 2358 | 2429 | 30877 | 30948 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 30956 | 30989 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-3L | ||||||||
| 12060611 | 12061234 | 31066 | 31689 | + | three_prime_utr | coding_transcript | ||
| 12060667 | 12061234 | 31066 | 31633 | + | three_prime_utr | coding_transcript | ||
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Sema-5c[30000]::S000169_fly_pretag_rev
CATAGTCATTAGATGGCACTTTTGGATATCGAAGATCGCGGGTTTCCTTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
Sema-5c[30000]::S000169_fly_pretag_fwd
GACAATCGGCACTGAACAATTGCCGCAGTAATATCGACGACGAGAAGTTCgaagtgcataccaatcaggacccgc
|
Fasta
|