Clone: 5906201510157786 B11
Tagged gene: CG34001
Identifier: FBgn0054001
| Clone | FlyFos031509(pRedFlp-Hgr)(CG34001[18790]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 10635016 | 10636014 | 10446 | 11444 | - | gene | CG14154 | coding_transcript | |
| 10632871 | 10633236 | 13224 | 13589 | - | gene | CG18628 | coding_transcript | |
| 10631253 | 10632731 | 13729 | 15207 | - | gene | CG8009 | coding_transcript | |
| 10627675 | 10631230 | 15230 | 18785 | + | gene | E(z) | coding_transcript | |
| 10624199 | 10627712 | 18748 | 23323 | - | gene | CG34001 | coding_transcript | |
| 10624199 | 10627712 | 18748 | 23323 | - | mrna | FBtr0300947 | coding_transcript | |
| 10627367 | 10627712 | 18748 | 20155 | - | exon | coding_transcript | ||
| 10627673 | 10627712 | 18748 | 18787 | - | three_prime_utr | coding_transcript | ||
| 10627367 | 10627672 | 18788 | 20155 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 18864 | 18897 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 18905 | 18976 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 18977 | 18997 | - | cds | TEV | CLC | |
| 2313 | 2336 | 18998 | 19021 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 19022 | 19063 | - | cds | V5 | CLC | |
| 1548 | 2264 | 19070 | 19786 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 19793 | 19852 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 10627299 | 10627366 | 20156 | 20223 | - | intron | coding_transcript | ||
| 10627175 | 10627298 | 20224 | 20347 | - | exon | coding_transcript | ||
| 10627175 | 10627298 | 20224 | 20347 | - | cds | coding_transcript | ||
| 10624296 | 10627174 | 20348 | 23226 | - | intron | coding_transcript | ||
| 10624227 | 10627069 | 20453 | 23295 | - | gene | hay | coding_transcript | |
| 10624227 | 10627069 | 20453 | 23295 | - | mrna | FBtr0076253 | coding_transcript | |
| 10624442 | 10627069 | 20453 | 23080 | - | mrna | FBtr0114599 | coding_transcript | |
| 10626476 | 10627069 | 20453 | 21046 | - | exon | coding_transcript | ||
| 10626476 | 10627069 | 20453 | 21046 | - | exon | coding_transcript | ||
| 10627022 | 10627069 | 20453 | 20500 | - | three_prime_utr | coding_transcript | ||
| 10627022 | 10627069 | 20453 | 20500 | - | three_prime_utr | coding_transcript | ||
| 10626476 | 10627021 | 20501 | 21046 | - | cds | coding_transcript | ||
| 10626476 | 10627021 | 20501 | 21046 | - | cds | coding_transcript | ||
| 10626419 | 10626475 | 21047 | 21103 | - | intron | coding_transcript | ||
| 10626419 | 10626475 | 21047 | 21103 | - | intron | coding_transcript | ||
| 10624620 | 10626418 | 21104 | 22902 | - | exon | coding_transcript | ||
| 10624620 | 10626418 | 21104 | 22902 | - | cds | coding_transcript | ||
| 10624620 | 10626418 | 21104 | 22902 | - | exon | coding_transcript | ||
| 10624620 | 10626418 | 21104 | 22902 | - | cds | coding_transcript | ||
| 10624560 | 10624619 | 22903 | 22962 | - | intron | coding_transcript | ||
| 10624560 | 10624619 | 22903 | 22962 | - | intron | coding_transcript | ||
| 10624442 | 10624559 | 22963 | 23080 | - | exon | coding_transcript | ||
| 10624466 | 10624559 | 22963 | 23056 | - | exon | coding_transcript | ||
| 10624508 | 10624559 | 22963 | 23014 | - | cds | coding_transcript | ||
| 10624508 | 10624559 | 22963 | 23014 | - | cds | coding_transcript | ||
| 10624442 | 10624507 | 23015 | 23080 | - | five_prime_utr | coding_transcript | ||
| 10624466 | 10624507 | 23015 | 23056 | - | five_prime_utr | coding_transcript | ||
| 10624296 | 10624465 | 23057 | 23226 | - | intron | coding_transcript | ||
| 10624199 | 10624295 | 23227 | 23323 | - | exon | coding_transcript | ||
| 10624227 | 10624295 | 23227 | 23295 | - | exon | coding_transcript | ||
| 10624227 | 10624295 | 23227 | 23295 | - | five_prime_utr | coding_transcript | ||
| 10624276 | 10624295 | 23227 | 23246 | - | cds | coding_transcript | ||
| 10624199 | 10624275 | 23247 | 23323 | - | five_prime_utr | coding_transcript | ||
| 10623134 | 10624035 | 23487 | 24388 | + | gene | CG42535 | coding_transcript | |
| 10622183 | 10623169 | 24353 | 25339 | + | gene | CG42536 | coding_transcript | |
| 10620780 | 10621584 | 25938 | 26742 | + | gene | CG14151 | coding_transcript | |
| 10619652 | 10620539 | 26983 | 27870 | - | gene | CG34238 | coding_transcript | |
| 10617828 | 10618699 | 28823 | 29694 | + | gene | CG43127 | coding_transcript | |
| 10616166 | 10616676 | 30846 | 31356 | + | gene | CG42521 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG34001[18790]::S000169_fly_pretag_rev
AAATCGTATCATACAAATTGAATAAAACTATATTTTTGAAAACACACCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG34001[18790]::S000169_fly_pretag_fwd
TCTTCAAATCGCGACCCAAACCAATTATAGCCAATGTAGCTAAATCCGTTgaagtgcataccaatcaggacccgc
|
Fasta
|