Clone: 5906201510157786 A08
Tagged gene: sec31
Identifier: FBgn0033339
| Clone | FlyFos031471(pRedFlp-Hgr)(sec31[21810]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 4796935 | 4797854 | 10036 | 10955 | + | gene | CG8252 | coding_transcript | |
| 4792347 | 4794506 | 13384 | 15543 | + | gene | CG8258 | coding_transcript | |
| 4788908 | 4792296 | 15594 | 18982 | - | gene | Ggamma1 | coding_transcript | |
| 4788071 | 4788877 | 19013 | 19819 | + | gene | MrgBP | coding_transcript | |
| 4787746 | 4788122 | 19768 | 20144 | - | gene | CG13751 | coding_transcript | |
| 4786228 | 4787706 | 20184 | 21662 | + | gene | ana2 | coding_transcript | |
| 4781129 | 4786303 | 21587 | 27823 | - | gene | sec31 | coding_transcript | |
| 4781129 | 4786303 | 21587 | 27823 | - | mrna | FBtr0088642 | coding_transcript | |
| 4781129 | 4786303 | 21587 | 27823 | - | mrna | FBtr0088643 | coding_transcript | |
| 4785894 | 4786303 | 21587 | 23058 | - | exon | coding_transcript | ||
| 4785894 | 4786303 | 21587 | 23058 | - | exon | coding_transcript | ||
| 4786083 | 4786303 | 21587 | 21807 | - | three_prime_utr | coding_transcript | ||
| 4786083 | 4786303 | 21587 | 21807 | - | three_prime_utr | coding_transcript | ||
| 4785894 | 4786082 | 21808 | 23058 | - | cds | coding_transcript | ||
| 4785894 | 4786082 | 21808 | 23058 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 21884 | 21917 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 21925 | 21996 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 21997 | 22017 | - | cds | TEV | CLC | |
| 2313 | 2336 | 22018 | 22041 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 22042 | 22083 | - | cds | V5 | CLC | |
| 1548 | 2264 | 22090 | 22806 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 22813 | 22872 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 4785828 | 4785893 | 23059 | 23124 | - | intron | coding_transcript | ||
| 4785828 | 4785893 | 23059 | 23124 | - | intron | coding_transcript | ||
| 4785756 | 4785827 | 23125 | 23196 | - | exon | coding_transcript | ||
| 4785756 | 4785827 | 23125 | 23196 | - | cds | coding_transcript | ||
| 4785756 | 4785827 | 23125 | 23196 | - | exon | coding_transcript | ||
| 4785756 | 4785827 | 23125 | 23196 | - | cds | coding_transcript | ||
| 4785679 | 4785755 | 23197 | 23273 | - | intron | coding_transcript | ||
| 4785679 | 4785755 | 23197 | 23273 | - | intron | coding_transcript | ||
| 4785370 | 4785678 | 23274 | 23582 | - | exon | coding_transcript | ||
| 4785370 | 4785678 | 23274 | 23582 | - | cds | coding_transcript | ||
| 4785370 | 4785678 | 23274 | 23582 | - | exon | coding_transcript | ||
| 4785370 | 4785678 | 23274 | 23582 | - | cds | coding_transcript | ||
| 4785308 | 4785369 | 23583 | 23644 | - | intron | coding_transcript | ||
| 4785308 | 4785369 | 23583 | 23644 | - | intron | coding_transcript | ||
| 4785200 | 4785307 | 23645 | 23752 | - | exon | coding_transcript | ||
| 4785200 | 4785307 | 23645 | 23752 | - | cds | coding_transcript | ||
| 4785200 | 4785307 | 23645 | 23752 | - | exon | coding_transcript | ||
| 4785200 | 4785307 | 23645 | 23752 | - | cds | coding_transcript | ||
| 4785136 | 4785199 | 23753 | 23816 | - | intron | coding_transcript | ||
| 4785136 | 4785199 | 23753 | 23816 | - | intron | coding_transcript | ||
| 4783709 | 4785135 | 23817 | 25243 | - | exon | coding_transcript | ||
| 4783709 | 4785135 | 23817 | 25243 | - | cds | coding_transcript | ||
| 4783709 | 4785135 | 23817 | 25243 | - | exon | coding_transcript | ||
| 4783709 | 4785135 | 23817 | 25243 | - | cds | coding_transcript | ||
| 4783559 | 4783708 | 25244 | 25393 | - | intron | coding_transcript | ||
| 4783559 | 4783708 | 25244 | 25393 | - | intron | coding_transcript | ||
| 4783456 | 4783558 | 25394 | 25496 | - | exon | coding_transcript | ||
| 4783456 | 4783558 | 25394 | 25496 | - | cds | coding_transcript | ||
| 4783459 | 4783558 | 25394 | 25493 | - | exon | coding_transcript | ||
| 4783459 | 4783558 | 25394 | 25493 | - | cds | coding_transcript | ||
| 4783150 | 4783458 | 25494 | 25802 | - | intron | coding_transcript | ||
| 4783150 | 4783455 | 25497 | 25802 | - | intron | coding_transcript | ||
| 4783037 | 4783149 | 25803 | 25915 | - | exon | coding_transcript | ||
| 4783037 | 4783149 | 25803 | 25915 | - | cds | coding_transcript | ||
| 4783037 | 4783149 | 25803 | 25915 | - | exon | coding_transcript | ||
| 4783037 | 4783149 | 25803 | 25915 | - | cds | coding_transcript | ||
| 4782979 | 4783036 | 25916 | 25973 | - | intron | coding_transcript | ||
| 4782979 | 4783036 | 25916 | 25973 | - | intron | coding_transcript | ||
| 4782735 | 4782978 | 25974 | 26217 | - | exon | coding_transcript | ||
| 4782735 | 4782978 | 25974 | 26217 | - | cds | coding_transcript | ||
| 4782735 | 4782978 | 25974 | 26217 | - | exon | coding_transcript | ||
| 4782735 | 4782978 | 25974 | 26217 | - | cds | coding_transcript | ||
| 4782673 | 4782734 | 26218 | 26279 | - | intron | coding_transcript | ||
| 4782673 | 4782734 | 26218 | 26279 | - | intron | coding_transcript | ||
| 4781709 | 4782672 | 26280 | 27243 | - | exon | coding_transcript | ||
| 4781709 | 4782672 | 26280 | 27243 | - | cds | coding_transcript | ||
| 4781709 | 4782672 | 26280 | 27243 | - | exon | coding_transcript | ||
| 4781709 | 4782672 | 26280 | 27243 | - | cds | coding_transcript | ||
| 4781647 | 4781708 | 27244 | 27305 | - | intron | coding_transcript | ||
| 4781647 | 4781708 | 27244 | 27305 | - | intron | coding_transcript | ||
| 4781431 | 4781646 | 27306 | 27521 | - | exon | coding_transcript | ||
| 4781431 | 4781646 | 27306 | 27521 | - | exon | coding_transcript | ||
| 4781450 | 4781646 | 27306 | 27502 | - | cds | coding_transcript | ||
| 4781450 | 4781646 | 27306 | 27502 | - | cds | coding_transcript | ||
| 4781431 | 4781449 | 27503 | 27521 | - | five_prime_utr | coding_transcript | ||
| 4781431 | 4781449 | 27503 | 27521 | - | five_prime_utr | coding_transcript | ||
| 4781243 | 4781430 | 27522 | 27709 | - | intron | coding_transcript | ||
| 4781243 | 4781430 | 27522 | 27709 | - | intron | coding_transcript | ||
| 4781129 | 4781242 | 27710 | 27823 | - | exon | coding_transcript | ||
| 4781129 | 4781242 | 27710 | 27823 | - | five_prime_utr | coding_transcript | ||
| 4781129 | 4781242 | 27710 | 27823 | - | exon | coding_transcript | ||
| 4781129 | 4781242 | 27710 | 27823 | - | five_prime_utr | coding_transcript | ||
| 4779345 | 4780844 | 28108 | 29607 | - | gene | Dmn | coding_transcript | |
| 4775909 | 4778941 | 30011 | 33043 | + | gene | CG8272 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
sec31[21810]::S000169_fly_pretag_rev
TAAGAATATACGTTTAGTGAACTTGGCTGCGATCCGGCGACGGGGCTCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
sec31[21810]::S000169_fly_pretag_fwd
GACTGAAGGTCCTACTGCAATCCGCATCCGAGCTACAGTTGGTTCTGCGTgaagtgcataccaatcaggacccgc
|
Fasta
|