Clone: 77426861790443 H07
Tagged gene: MED9
Identifier: FBgn0260401
| Clone | FlyFos030057(pRedFlp-Hgr)(MED9[19817]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 14061176 | 14062195 | 13062 | 14081 | - | gene | CG10916 | coding_transcript | |
| 14055913 | 14060112 | 15145 | 19344 | + | gene | Dgp-1 | coding_transcript | |
| 14054732 | 14055885 | 19372 | 21587 | - | gene | CG42518 | coding_transcript | |
| 14054782 | 14055885 | 19372 | 21537 | - | gene | MED9 | coding_transcript | |
| 14054782 | 14055885 | 19372 | 21537 | - | mrna | FBtr0300664 | coding_transcript | |
| 14054787 | 14055885 | 19372 | 21532 | - | mrna | FBtr0300662 | coding_transcript | |
| 14055713 | 14055885 | 19372 | 19544 | - | exon | coding_transcript | ||
| 14055713 | 14055885 | 19372 | 19544 | - | exon | coding_transcript | ||
| 14055713 | 14055885 | 19372 | 19544 | - | exon | coding_transcript | ||
| 14055713 | 14055885 | 19372 | 19544 | - | three_prime_utr | coding_transcript | ||
| 14055798 | 14055885 | 19372 | 19459 | - | three_prime_utr | coding_transcript | ||
| 14055798 | 14055885 | 19372 | 19459 | - | three_prime_utr | coding_transcript | ||
| 14055713 | 14055797 | 19460 | 19544 | - | cds | coding_transcript | ||
| 14055713 | 14055797 | 19460 | 19544 | - | cds | coding_transcript | ||
| 14055644 | 14055712 | 19545 | 19613 | - | intron | coding_transcript | ||
| 14055644 | 14055712 | 19545 | 19613 | - | intron | coding_transcript | ||
| 14055644 | 14055712 | 19545 | 19613 | - | intron | coding_transcript | ||
| 14055278 | 14055643 | 19614 | 21041 | - | exon | coding_transcript | ||
| 14055278 | 14055643 | 19614 | 21041 | - | exon | coding_transcript | ||
| 14055278 | 14055643 | 19614 | 21041 | - | exon | coding_transcript | ||
| 14055443 | 14055643 | 19614 | 19814 | - | three_prime_utr | coding_transcript | ||
| 14055471 | 14055643 | 19614 | 19786 | - | cds | coding_transcript | ||
| 14055471 | 14055643 | 19614 | 19786 | - | cds | coding_transcript | ||
| 14055278 | 14055470 | 19787 | 21041 | - | five_prime_utr | coding_transcript | ||
| 14055278 | 14055470 | 19787 | 21041 | - | five_prime_utr | coding_transcript | ||
| 14055278 | 14055442 | 19815 | 21041 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 19891 | 19924 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 19932 | 20003 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 20004 | 20024 | - | cds | TEV | CLC | |
| 2313 | 2336 | 20025 | 20048 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 20049 | 20090 | - | cds | V5 | CLC | |
| 1548 | 2264 | 20097 | 20813 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 20820 | 20879 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 14055227 | 14055277 | 21042 | 21092 | - | intron | coding_transcript | ||
| 14055227 | 14055277 | 21042 | 21092 | - | intron | coding_transcript | ||
| 14055227 | 14055277 | 21042 | 21092 | - | intron | coding_transcript | ||
| 14055163 | 14055226 | 21093 | 21156 | - | exon | coding_transcript | ||
| 14055163 | 14055226 | 21093 | 21156 | - | five_prime_utr | coding_transcript | ||
| 14055163 | 14055226 | 21093 | 21156 | - | exon | coding_transcript | ||
| 14055163 | 14055226 | 21093 | 21156 | - | five_prime_utr | coding_transcript | ||
| 14055163 | 14055226 | 21093 | 21156 | - | exon | coding_transcript | ||
| 14055163 | 14055226 | 21093 | 21156 | - | cds | coding_transcript | ||
| 14055028 | 14055162 | 21157 | 21291 | - | intron | coding_transcript | ||
| 14055028 | 14055162 | 21157 | 21291 | - | intron | coding_transcript | ||
| 14055028 | 14055162 | 21157 | 21291 | - | intron | coding_transcript | ||
| 14054782 | 14055027 | 21292 | 21537 | - | exon | coding_transcript | ||
| 14054787 | 14055027 | 21292 | 21532 | - | exon | coding_transcript | ||
| 14054787 | 14055027 | 21292 | 21532 | - | five_prime_utr | coding_transcript | ||
| 14054822 | 14055027 | 21292 | 21497 | - | cds | coding_transcript | ||
| 14054849 | 14055027 | 21292 | 21470 | - | exon | coding_transcript | ||
| 14054849 | 14055027 | 21292 | 21470 | - | five_prime_utr | coding_transcript | ||
| 14054782 | 14054821 | 21498 | 21537 | - | five_prime_utr | coding_transcript | ||
| 14052193 | 14054634 | 21685 | 24126 | + | gene | Nup75 | coding_transcript | |
| 14048222 | 14051719 | 24600 | 28097 | - | gene | CG10915 | coding_transcript | |
| 14045772 | 14047815 | 28504 | 30547 | - | gene | CG10914 | coding_transcript | |
| 14042350 | 14045697 | 30622 | 33969 | + | gene | lolal | coding_transcript | |
| 14039209 | 14041565 | 34754 | 37110 | - | gene | adp | coding_transcript | |
| 14035969 | 14038892 | 37427 | 40350 | + | gene | CG5742 | coding_transcript | |
| 14034802 | 14035499 | 40820 | 41517 | + | gene | CG17680 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
MED9[19817]::S000169_fly_pretag_fwd
AGCTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCgaagtgcataccaatcaggacccgc
|
Fasta
|
|
MED9[19817]::S000169_fly_pretag_rev
TTAGCAGTCGCAGCACCATCTTGCCCTTTTTTTTATTTTGCTGCCGCCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|