Clone: 13996837788417626 C03
Tagged gene: CG33993
Identifier: FBgn0053993
| Clone | FlyFos029419(pRedFlp-Hgr)(CG33993[34592]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 5926136 | 5943755 | 17710 | 36391 | + | gene | CG33993 | coding_transcript | |
| 5926136 | 5943755 | 17710 | 36391 | + | mrna | FBtr0100046 | coding_transcript | |
| 5943393 | 5943755 | 17710 | 18072 | + | exon | coding_transcript | ||
| 5943393 | 5943755 | 17710 | 18072 | + | five_prime_utr | coding_transcript | ||
| 5931107 | 5943392 | 18073 | 30358 | + | intron | coding_transcript | ||
| 5930929 | 5931106 | 30359 | 30536 | + | exon | coding_transcript | ||
| 5931069 | 5931106 | 30359 | 30396 | + | five_prime_utr | coding_transcript | ||
| 5930929 | 5931068 | 30397 | 30536 | + | cds | coding_transcript | ||
| 5930833 | 5930928 | 30537 | 30632 | + | intron | coding_transcript | ||
| 5930499 | 5930832 | 30633 | 30966 | + | exon | coding_transcript | ||
| 5930499 | 5930832 | 30633 | 30966 | + | cds | coding_transcript | ||
| 5927794 | 5930498 | 30967 | 33671 | + | intron | coding_transcript | ||
| 5926465 | 5928403 | 33062 | 36062 | + | mrna | FBtr0301034 | coding_transcript | |
| 5928285 | 5928403 | 33062 | 33180 | + | exon | coding_transcript | ||
| 5928285 | 5928403 | 33062 | 33180 | + | five_prime_utr | coding_transcript | ||
| 5927794 | 5928284 | 33181 | 33671 | + | intron | coding_transcript | ||
| 5927505 | 5927793 | 33672 | 33960 | + | exon | coding_transcript | ||
| 5927505 | 5927793 | 33672 | 33960 | + | cds | coding_transcript | ||
| 5927505 | 5927793 | 33672 | 33960 | + | exon | coding_transcript | ||
| 5927779 | 5927793 | 33672 | 33686 | + | five_prime_utr | coding_transcript | ||
| 5927505 | 5927778 | 33687 | 33960 | + | cds | coding_transcript | ||
| 5927435 | 5927504 | 33961 | 34030 | + | intron | coding_transcript | ||
| 5927435 | 5927504 | 33961 | 34030 | + | intron | coding_transcript | ||
| 5927154 | 5927434 | 34031 | 34311 | + | exon | coding_transcript | ||
| 5927154 | 5927434 | 34031 | 34311 | + | cds | coding_transcript | ||
| 5927154 | 5927434 | 34031 | 34311 | + | exon | coding_transcript | ||
| 5927154 | 5927434 | 34031 | 34311 | + | cds | coding_transcript | ||
| 5927092 | 5927153 | 34312 | 34373 | + | intron | coding_transcript | ||
| 5927092 | 5927153 | 34312 | 34373 | + | intron | coding_transcript | ||
| 5926136 | 5927091 | 34374 | 36391 | + | exon | coding_transcript | ||
| 5926465 | 5927091 | 34374 | 36062 | + | exon | coding_transcript | ||
| 5926870 | 5927091 | 34374 | 35657 | + | cds | coding_transcript | ||
| 5926870 | 5927091 | 34374 | 35657 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 34593 | 34652 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 34659 | 35375 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 35382 | 35423 | + | cds | V5 | CLC | |
| 2313 | 2336 | 35424 | 35447 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 35448 | 35468 | + | cds | TEV | CLC | |
| 2358 | 2429 | 35469 | 35540 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 35548 | 35581 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-3L | ||||||||
| 5926136 | 5926869 | 35658 | 36391 | + | three_prime_utr | coding_transcript | ||
| 5926465 | 5926869 | 35658 | 36062 | + | three_prime_utr | coding_transcript | ||
| 5923362 | 5925873 | 36654 | 39165 | + | gene | Bj1 | coding_transcript | |
| 5917155 | 5923220 | 39307 | 45372 | - | gene | CG33523 | coding_transcript | |
| 5915155 | 5916667 | 45860 | 47372 | - | gene | CG32407 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG33993[34592]::S000169_fly_pretag_fwd
TGTATGGCTCGCTGAACGACTTTCGCAAAATGATGGCCGATTTGAATGTGgaagtgcataccaatcaggacccgc
|
Fasta
|
|
CG33993[34592]::S000169_fly_pretag_rev
TCAATCAACGTGACATAATTACTTAATTAATTAAGAGCGCCCAGCGGTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|