Clone: 7270297670695668 H11
Tagged gene: Rab8
Identifier: FBgn0262518
| Clone | FlyFos028198(pRedFlp-Hgr)(Rab8[25906]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 19860588 | 19864174 | 24839 | 29487 | - | gene | Rab8 | coding_transcript | |
| 19860588 | 19864174 | 24839 | 29487 | - | mrna | FBtr0074921 | coding_transcript | |
| 19860588 | 19861745 | 24839 | 27058 | - | exon | coding_transcript | ||
| 19860588 | 19861652 | 24839 | 25903 | - | three_prime_utr | coding_transcript | ||
| 19860808 | 19864174 | 25059 | 29487 | - | mrna | FBtr0308833 | coding_transcript | |
| 19860808 | 19861745 | 25059 | 27058 | - | exon | coding_transcript | ||
| 19860808 | 19861652 | 25059 | 25903 | - | three_prime_utr | coding_transcript | ||
| 19861136 | 19862658 | 25387 | 27971 | - | mrna | FBtr0308832 | coding_transcript | |
| 19861136 | 19861745 | 25387 | 27058 | - | exon | coding_transcript | ||
| 19861136 | 19861652 | 25387 | 25903 | - | three_prime_utr | coding_transcript | ||
| 19861653 | 19861745 | 25904 | 27058 | - | cds | coding_transcript | ||
| 19861653 | 19861745 | 25904 | 27058 | - | cds | coding_transcript | ||
| 19861653 | 19861745 | 25904 | 27058 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 25980 | 26013 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 26021 | 26092 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 26093 | 26113 | - | cds | TEV | CLC | |
| 2313 | 2336 | 26114 | 26137 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 26138 | 26179 | - | cds | V5 | CLC | |
| 1548 | 2264 | 26186 | 26902 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 26909 | 26968 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 19861746 | 19861823 | 27059 | 27136 | - | intron | coding_transcript | ||
| 19861746 | 19861823 | 27059 | 27136 | - | intron | coding_transcript | ||
| 19861746 | 19861823 | 27059 | 27136 | - | intron | coding_transcript | ||
| 19861824 | 19861964 | 27137 | 27277 | - | exon | coding_transcript | ||
| 19861824 | 19861964 | 27137 | 27277 | - | cds | coding_transcript | ||
| 19861824 | 19861964 | 27137 | 27277 | - | exon | coding_transcript | ||
| 19861824 | 19861964 | 27137 | 27277 | - | cds | coding_transcript | ||
| 19861824 | 19861964 | 27137 | 27277 | - | exon | coding_transcript | ||
| 19861824 | 19861964 | 27137 | 27277 | - | cds | coding_transcript | ||
| 19861965 | 19862202 | 27278 | 27515 | - | intron | coding_transcript | ||
| 19861965 | 19862202 | 27278 | 27515 | - | intron | coding_transcript | ||
| 19861965 | 19862202 | 27278 | 27515 | - | intron | coding_transcript | ||
| 19862203 | 19862407 | 27516 | 27720 | - | exon | coding_transcript | ||
| 19862203 | 19862407 | 27516 | 27720 | - | cds | coding_transcript | ||
| 19862203 | 19862407 | 27516 | 27720 | - | exon | coding_transcript | ||
| 19862203 | 19862407 | 27516 | 27720 | - | cds | coding_transcript | ||
| 19862203 | 19862407 | 27516 | 27720 | - | exon | coding_transcript | ||
| 19862203 | 19862407 | 27516 | 27720 | - | cds | coding_transcript | ||
| 19862408 | 19862467 | 27721 | 27780 | - | intron | coding_transcript | ||
| 19862408 | 19862467 | 27721 | 27780 | - | intron | coding_transcript | ||
| 19862408 | 19862467 | 27721 | 27780 | - | intron | coding_transcript | ||
| 19862468 | 19862528 | 27781 | 27841 | - | exon | coding_transcript | ||
| 19862468 | 19862528 | 27781 | 27841 | - | cds | coding_transcript | ||
| 19862468 | 19862528 | 27781 | 27841 | - | exon | coding_transcript | ||
| 19862468 | 19862528 | 27781 | 27841 | - | cds | coding_transcript | ||
| 19862468 | 19862528 | 27781 | 27841 | - | exon | coding_transcript | ||
| 19862468 | 19862528 | 27781 | 27841 | - | cds | coding_transcript | ||
| 19862529 | 19863480 | 27842 | 28793 | - | intron | coding_transcript | ||
| 19862529 | 19863480 | 27842 | 28793 | - | intron | coding_transcript | ||
| 19862529 | 19862607 | 27842 | 27920 | - | intron | coding_transcript | ||
| 19862608 | 19862658 | 27921 | 27971 | - | exon | coding_transcript | ||
| 19862608 | 19862626 | 27921 | 27939 | - | cds | coding_transcript | ||
| 19862627 | 19862658 | 27940 | 27971 | - | five_prime_utr | coding_transcript | ||
| 19863481 | 19864174 | 28794 | 29487 | - | exon | coding_transcript | ||
| 19863481 | 19864174 | 28794 | 29487 | - | exon | coding_transcript | ||
| 19863481 | 19863604 | 28794 | 28917 | - | cds | coding_transcript | ||
| 19863481 | 19863604 | 28794 | 28917 | - | cds | coding_transcript | ||
| 19863605 | 19864174 | 28918 | 29487 | - | five_prime_utr | coding_transcript | ||
| 19863605 | 19864174 | 28918 | 29487 | - | five_prime_utr | coding_transcript | ||
| 19866992 | 19874167 | 32305 | 39480 | + | gene | CG8334 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Rab8[25906]::S000169_fly_pretag_fwd
CGATGGACAGTCGGACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTgaagtgcataccaatcaggacccgc
|
Fasta
|
|
Rab8[25906]::S000169_fly_pretag_rev
TAGTCGTTGCCACCATGCCGCTTCAGTGCCGAGCGCACGTTGCCACGTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|