Clone: 7270297670695668 C09
Tagged gene: CG9449
Identifier: FBgn0036875
| Clone | FlyFos028161(pRedFlp-Hgr)(CG9449[17843]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 19481054 | 19481448 | 13379 | 13773 | + | gene | CG32212 | coding_transcript | |
| 19485373 | 19489812 | 17698 | 23199 | - | gene | CG9449 | coding_transcript | |
| 19485373 | 19489812 | 17698 | 23199 | - | mrna | FBtr0290044 | coding_transcript | |
| 19485373 | 19489079 | 17698 | 22466 | - | mrna | FBtr0273417 | coding_transcript | |
| 19485373 | 19486226 | 17698 | 19613 | - | exon | coding_transcript | ||
| 19485373 | 19486226 | 17698 | 19613 | - | exon | coding_transcript | ||
| 19485373 | 19485515 | 17698 | 17840 | - | three_prime_utr | coding_transcript | ||
| 19485373 | 19485515 | 17698 | 17840 | - | three_prime_utr | coding_transcript | ||
| 19485516 | 19486226 | 17841 | 19613 | - | cds | coding_transcript | ||
| 19485516 | 19486226 | 17841 | 19613 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 17917 | 17950 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 17958 | 18029 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 18030 | 18050 | - | cds | TEV | CLC | |
| 2313 | 2336 | 18051 | 18074 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 18075 | 18116 | - | cds | V5 | CLC | |
| 1548 | 2264 | 18123 | 18839 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 18846 | 18905 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 19486227 | 19486599 | 19614 | 19986 | - | intron | coding_transcript | ||
| 19486227 | 19486599 | 19614 | 19986 | - | intron | coding_transcript | ||
| 19486439 | 19489812 | 19826 | 23199 | - | mrna | FBtr0290043 | coding_transcript | |
| 19486439 | 19486758 | 19826 | 20145 | - | exon | coding_transcript | ||
| 19486439 | 19486569 | 19826 | 19956 | - | three_prime_utr | coding_transcript | ||
| 19486570 | 19486758 | 19957 | 20145 | - | cds | coding_transcript | ||
| 19486600 | 19486758 | 19987 | 20145 | - | exon | coding_transcript | ||
| 19486600 | 19486758 | 19987 | 20145 | - | cds | coding_transcript | ||
| 19486600 | 19486758 | 19987 | 20145 | - | exon | coding_transcript | ||
| 19486600 | 19486719 | 19987 | 20106 | - | cds | coding_transcript | ||
| 19486720 | 19486758 | 20107 | 20145 | - | five_prime_utr | coding_transcript | ||
| 19486759 | 19487437 | 20146 | 20824 | - | intron | coding_transcript | ||
| 19486759 | 19487437 | 20146 | 20824 | - | intron | coding_transcript | ||
| 19486759 | 19487437 | 20146 | 20824 | - | intron | coding_transcript | ||
| 19487438 | 19487521 | 20825 | 20908 | - | exon | coding_transcript | ||
| 19487438 | 19487521 | 20825 | 20908 | - | cds | coding_transcript | ||
| 19487438 | 19487521 | 20825 | 20908 | - | exon | coding_transcript | ||
| 19487438 | 19487521 | 20825 | 20908 | - | five_prime_utr | coding_transcript | ||
| 19487438 | 19487521 | 20825 | 20908 | - | exon | coding_transcript | ||
| 19487438 | 19487521 | 20825 | 20908 | - | cds | coding_transcript | ||
| 19487522 | 19487919 | 20909 | 21306 | - | intron | coding_transcript | ||
| 19487522 | 19487919 | 20909 | 21306 | - | intron | coding_transcript | ||
| 19487522 | 19487919 | 20909 | 21306 | - | intron | coding_transcript | ||
| 19487920 | 19488018 | 21307 | 21405 | - | exon | coding_transcript | ||
| 19487920 | 19488018 | 21307 | 21405 | - | cds | coding_transcript | ||
| 19487920 | 19488018 | 21307 | 21405 | - | exon | coding_transcript | ||
| 19487920 | 19488018 | 21307 | 21405 | - | five_prime_utr | coding_transcript | ||
| 19487920 | 19488018 | 21307 | 21405 | - | exon | coding_transcript | ||
| 19487920 | 19488018 | 21307 | 21405 | - | cds | coding_transcript | ||
| 19488019 | 19489650 | 21406 | 23037 | - | intron | coding_transcript | ||
| 19488019 | 19489650 | 21406 | 23037 | - | intron | coding_transcript | ||
| 19488019 | 19488888 | 21406 | 22275 | - | intron | coding_transcript | ||
| 19488889 | 19489079 | 22276 | 22466 | - | exon | coding_transcript | ||
| 19488889 | 19489079 | 22276 | 22466 | - | five_prime_utr | coding_transcript | ||
| 19489651 | 19489812 | 23038 | 23199 | - | exon | coding_transcript | ||
| 19489651 | 19489812 | 23038 | 23199 | - | cds | coding_transcript | ||
| 19489651 | 19489812 | 23038 | 23199 | - | exon | coding_transcript | ||
| 19489651 | 19489812 | 23038 | 23199 | - | cds | coding_transcript | ||
| 19491502 | 19493912 | 24889 | 27299 | - | gene | CG9451 | coding_transcript | |
| 19494110 | 19496970 | 27497 | 30357 | - | gene | CG9452 | coding_transcript | |
| 19510761 | 19511375 | 44148 | 44762 | - | gene | Cpr76Ba | coding_transcript | |
| 19512795 | 19513391 | 46182 | 46778 | + | gene | Cpr76Bb | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG9449[17843]::S000169_fly_pretag_rev
GAAGTGTAGCACCACAACGATTTTCTATATCCACCATATTGTCGTTCTTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG9449[17843]::S000169_fly_pretag_fwd
GGTGCGAGTCTCGCAATGAAGCCTTCACAGAACCACCTCTCCGAGGTCCTgaagtgcataccaatcaggacccgc
|
Fasta
|