Clone: 7270297670695668 D08
Tagged gene: CG4836
Identifier: FBgn0038762
| Clone | FlyFos028158(pRedFlp-Hgr)(CG4836[41702]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 15834718 | 15837434 | 32615 | 35331 | + | gene | MED25 | coding_transcript | |
| 15837498 | 15839226 | 35395 | 37123 | - | gene | CG17190 | coding_transcript | |
| 15839594 | 15844513 | 37491 | 43472 | + | gene | CG4836 | coding_transcript | |
| 15839594 | 15844513 | 37491 | 43472 | + | mrna | FBtr0083828 | coding_transcript | |
| 15839594 | 15843970 | 37491 | 42929 | + | mrna | FBtr0083826 | coding_transcript | |
| 15839594 | 15843970 | 37491 | 42929 | + | mrna | FBtr0083827 | coding_transcript | |
| 15839594 | 15839740 | 37491 | 37637 | + | exon | coding_transcript | ||
| 15839594 | 15839740 | 37491 | 37637 | + | exon | coding_transcript | ||
| 15839594 | 15839740 | 37491 | 37637 | + | exon | coding_transcript | ||
| 15839594 | 15839704 | 37491 | 37601 | + | five_prime_utr | coding_transcript | ||
| 15839594 | 15839704 | 37491 | 37601 | + | five_prime_utr | coding_transcript | ||
| 15839594 | 15839704 | 37491 | 37601 | + | five_prime_utr | coding_transcript | ||
| 15839705 | 15839740 | 37602 | 37637 | + | cds | coding_transcript | ||
| 15839705 | 15839740 | 37602 | 37637 | + | cds | coding_transcript | ||
| 15839705 | 15839740 | 37602 | 37637 | + | cds | coding_transcript | ||
| 15839741 | 15840009 | 37638 | 37906 | + | intron | coding_transcript | ||
| 15839741 | 15840009 | 37638 | 37906 | + | intron | coding_transcript | ||
| 15839741 | 15840009 | 37638 | 37906 | + | intron | coding_transcript | ||
| 15839848 | 15843970 | 37745 | 42929 | + | mrna | FBtr0273258 | coding_transcript | |
| 15839848 | 15843970 | 37745 | 42929 | + | mrna | FBtr0273259 | coding_transcript | |
| 15839848 | 15842479 | 37745 | 40376 | + | exon | coding_transcript | ||
| 15839848 | 15842479 | 37745 | 40376 | + | exon | coding_transcript | ||
| 15839848 | 15839952 | 37745 | 37849 | + | five_prime_utr | coding_transcript | ||
| 15839848 | 15839952 | 37745 | 37849 | + | five_prime_utr | coding_transcript | ||
| 15839953 | 15842479 | 37850 | 40376 | + | cds | coding_transcript | ||
| 15839953 | 15842479 | 37850 | 40376 | + | cds | coding_transcript | ||
| 15840010 | 15842479 | 37907 | 40376 | + | exon | coding_transcript | ||
| 15840010 | 15842479 | 37907 | 40376 | + | cds | coding_transcript | ||
| 15840010 | 15842479 | 37907 | 40376 | + | exon | coding_transcript | ||
| 15840010 | 15842479 | 37907 | 40376 | + | cds | coding_transcript | ||
| 15840010 | 15842479 | 37907 | 40376 | + | exon | coding_transcript | ||
| 15840010 | 15842479 | 37907 | 40376 | + | cds | coding_transcript | ||
| 15842480 | 15842552 | 40377 | 40449 | + | intron | coding_transcript | ||
| 15842480 | 15842547 | 40377 | 40444 | + | intron | coding_transcript | ||
| 15842480 | 15842547 | 40377 | 40444 | + | intron | coding_transcript | ||
| 15842480 | 15842543 | 40377 | 40440 | + | intron | coding_transcript | ||
| 15842480 | 15842543 | 40377 | 40440 | + | intron | coding_transcript | ||
| 15842544 | 15842738 | 40441 | 40635 | + | exon | coding_transcript | ||
| 15842544 | 15842738 | 40441 | 40635 | + | cds | coding_transcript | ||
| 15842544 | 15842738 | 40441 | 40635 | + | exon | coding_transcript | ||
| 15842544 | 15842738 | 40441 | 40635 | + | cds | coding_transcript | ||
| 15842548 | 15842738 | 40445 | 40635 | + | exon | coding_transcript | ||
| 15842548 | 15842738 | 40445 | 40635 | + | exon | coding_transcript | ||
| 15842548 | 15842552 | 40445 | 40449 | + | cds | coding_transcript | ||
| 15842548 | 15842552 | 40445 | 40449 | + | cds | coding_transcript | ||
| 15842553 | 15842738 | 40450 | 40635 | + | three_prime_utr | coding_transcript | ||
| 15842553 | 15842738 | 40450 | 40635 | + | exon | coding_transcript | ||
| 15842553 | 15842738 | 40450 | 40635 | + | cds | coding_transcript | ||
| 15842553 | 15842738 | 40450 | 40635 | + | three_prime_utr | coding_transcript | ||
| 15842739 | 15842799 | 40636 | 40696 | + | intron | coding_transcript | ||
| 15842739 | 15842799 | 40636 | 40696 | + | intron | coding_transcript | ||
| 15842739 | 15842799 | 40636 | 40696 | + | intron | coding_transcript | ||
| 15842739 | 15842799 | 40636 | 40696 | + | intron | coding_transcript | ||
| 15842739 | 15842799 | 40636 | 40696 | + | intron | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | exon | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | cds | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | exon | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | three_prime_utr | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | exon | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | cds | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | exon | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | three_prime_utr | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | exon | coding_transcript | ||
| 15842800 | 15843580 | 40697 | 41477 | + | cds | coding_transcript | ||
| 15843581 | 15843636 | 41478 | 41533 | + | intron | coding_transcript | ||
| 15843581 | 15843636 | 41478 | 41533 | + | intron | coding_transcript | ||
| 15843581 | 15843636 | 41478 | 41533 | + | intron | coding_transcript | ||
| 15843581 | 15843636 | 41478 | 41533 | + | intron | coding_transcript | ||
| 15843581 | 15843636 | 41478 | 41533 | + | intron | coding_transcript | ||
| 15843637 | 15844513 | 41534 | 43472 | + | exon | coding_transcript | ||
| 15843637 | 15843970 | 41534 | 42929 | + | exon | coding_transcript | ||
| 15843637 | 15843970 | 41534 | 42929 | + | three_prime_utr | coding_transcript | ||
| 15843637 | 15843970 | 41534 | 42929 | + | exon | coding_transcript | ||
| 15843637 | 15843970 | 41534 | 42929 | + | exon | coding_transcript | ||
| 15843637 | 15843970 | 41534 | 42929 | + | three_prime_utr | coding_transcript | ||
| 15843637 | 15843970 | 41534 | 42929 | + | exon | coding_transcript | ||
| 15843637 | 15843808 | 41534 | 42767 | + | cds | coding_transcript | ||
| 15843637 | 15843808 | 41534 | 42767 | + | cds | coding_transcript | ||
| 15843637 | 15843808 | 41534 | 42767 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 41703 | 41762 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 41769 | 42485 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 42492 | 42533 | + | cds | V5 | CLC | |
| 2313 | 2336 | 42534 | 42557 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 42558 | 42578 | + | cds | TEV | CLC | |
| 2358 | 2429 | 42579 | 42650 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 42658 | 42691 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-3R | ||||||||
| 15843809 | 15844513 | 42768 | 43472 | + | three_prime_utr | coding_transcript | ||
| 15843809 | 15843970 | 42768 | 42929 | + | three_prime_utr | coding_transcript | ||
| 15843809 | 15843970 | 42768 | 42929 | + | three_prime_utr | coding_transcript | ||
| 15844300 | 15847038 | 43259 | 45997 | - | gene | CG4433 | coding_transcript | |
| 15847425 | 15852207 | 46384 | 51166 | + | gene | psidin | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG4836[41702]::S000169_fly_pretag_rev
ACCATAAATTTATCCAATGCCGGCTCGGAACTTCTCCTCCGAATCGCCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG4836[41702]::S000169_fly_pretag_fwd
ACATTGGGCTGGGCAAGGTGATTGTTAACTGTGCGGAAGAAGTGGACGTCgaagtgcataccaatcaggacccgc
|
Fasta
|