Clone: 7270297670695668 H04

Tagged gene: TrpA1
Identifier: FBgn0035934

Clone FlyFos028139(pRedFlp-Hgr)(TrpA1[32089]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT
Library FlyFos 5.43 D.mel in E. coli EPI300
Genome Species: Drosophila melanogaster, Release: 5.43

Validation(click to hide details)

Type Status Download / View
Grows in selection good

Genes in pFlyFos vector(click to hide details)

Gene Clone relative Genome relative
Name Length Start End Strand Start End Strand
DsRed 716 8417 9132 + 8417 9132 +

Features(click to show details)

Start (Source) End (Source) Start End Strand Type Name Source
pFlyFos
1 107 1 107 - cds LacZ epicentre
4 21 4 21 - primer_bind CC2_rev epicentre
310 593 310 593 + misc_recomb attB epicentre
727 1386 727 1386 - cds Cat epicentre
1605 1952 1605 1952 + cds redF epicentre
2336 2953 2336 2953 + rep_origin oriV epicentre
2953 3007 2953 3007 + rep_origin ori2 epicentre
3347 4102 3347 4102 + cds repE epicentre
4681 5856 4681 5856 + cds parA epicentre
5856 6827 5856 6827 + cds parB epicentre
6900 7417 6900 7417 + repeat_region parC epicentre
7633 8031 7633 8031 + misc_binding cos epicentre
8049 8082 8049 8082 + misc_recomb loxP epicentre
8182 8416 8182 8416 + promoter 3xP3 epicentre
8417 9132 8417 9132 + gene DsRed epicentre
8452 9132 8452 9132 + cds DsRed epicentre
9284 9334 9284 9334 + terminator SV40 epicentre
9408 9630 9408 9630 - cds LacZ epicentre
9559 9576 9559 9576 + primer_bind T7 epicentre
9610 9627 9610 9627 + primer_bind CC2_fwd epicentre
dmel-5.43-3L
8899017 8905771 14109 20863 + gene mfr coding_transcript
8887788 8896780 23100 33154 + gene TrpA1 coding_transcript
8887788 8896780 23100 33154 + mrna FBtr0300208 coding_transcript
8887788 8896780 23100 33154 + mrna FBtr0300209 coding_transcript
8896646 8896780 23100 23234 + exon coding_transcript
8896646 8896780 23100 23234 + cds coding_transcript
8896646 8896780 23100 23234 + exon coding_transcript
8896646 8896780 23100 23234 + cds coding_transcript
8896205 8896645 23235 23675 + intron coding_transcript
8896205 8896645 23235 23675 + intron coding_transcript
8896049 8896204 23676 23831 + exon coding_transcript
8896049 8896204 23676 23831 + cds coding_transcript
8896049 8896204 23676 23831 + exon coding_transcript
8896049 8896204 23676 23831 + cds coding_transcript
8894749 8896048 23832 25131 + intron coding_transcript
8894749 8896048 23832 25131 + intron coding_transcript
8894557 8894748 25132 25323 + exon coding_transcript
8894557 8894748 25132 25323 + cds coding_transcript
8894557 8894748 25132 25323 + exon coding_transcript
8894557 8894748 25132 25323 + cds coding_transcript
8893909 8894556 25324 25971 + intron coding_transcript
8893909 8894556 25324 25971 + intron coding_transcript
8893752 8893908 25972 26128 + exon coding_transcript
8893752 8893908 25972 26128 + cds coding_transcript
8893752 8893908 25972 26128 + exon coding_transcript
8893752 8893908 25972 26128 + cds coding_transcript
8893697 8893751 26129 26183 + intron coding_transcript
8893697 8893751 26129 26183 + intron coding_transcript
8893606 8893696 26184 26274 + exon coding_transcript
8893606 8893696 26184 26274 + cds coding_transcript
8893606 8893696 26184 26274 + exon coding_transcript
8893606 8893696 26184 26274 + cds coding_transcript
8893534 8893605 26275 26346 + intron coding_transcript
8893534 8893605 26275 26346 + intron coding_transcript
8893338 8893533 26347 26542 + exon coding_transcript
8893338 8893533 26347 26542 + cds coding_transcript
8893338 8893533 26347 26542 + exon coding_transcript
8893338 8893533 26347 26542 + cds coding_transcript
8892969 8893337 26543 26911 + intron coding_transcript
8892969 8893337 26543 26911 + intron coding_transcript
8892861 8892968 26912 27019 + exon coding_transcript
8892861 8892968 26912 27019 + cds coding_transcript
8892861 8892968 26912 27019 + exon coding_transcript
8892861 8892968 26912 27019 + cds coding_transcript
8892021 8892860 27020 27859 + intron coding_transcript
8892021 8892860 27020 27859 + intron coding_transcript
8891832 8892020 27860 28048 + exon coding_transcript
8891832 8892020 27860 28048 + cds coding_transcript
8891832 8892020 27860 28048 + exon coding_transcript
8891832 8892020 27860 28048 + cds coding_transcript
8891412 8891831 28049 28468 + intron coding_transcript
8891412 8891831 28049 28468 + intron coding_transcript
8891183 8891411 28469 28697 + exon coding_transcript
8891183 8891411 28469 28697 + cds coding_transcript
8891183 8891411 28469 28697 + exon coding_transcript
8891183 8891411 28469 28697 + cds coding_transcript
8891123 8891182 28698 28757 + intron coding_transcript
8891123 8891182 28698 28757 + intron coding_transcript
8890542 8891122 28758 29338 + exon coding_transcript
8890542 8891122 28758 29338 + cds coding_transcript
8890542 8891122 28758 29338 + exon coding_transcript
8890542 8891122 28758 29338 + cds coding_transcript
8890476 8890541 29339 29404 + intron coding_transcript
8890476 8890541 29339 29404 + intron coding_transcript
8890161 8890475 29405 29719 + exon coding_transcript
8890161 8890475 29405 29719 + cds coding_transcript
8890161 8890475 29405 29719 + exon coding_transcript
8890161 8890475 29405 29719 + cds coding_transcript
8889733 8890160 29720 30147 + intron coding_transcript
8890063 8890160 29720 29817 + intron coding_transcript
8889952 8890062 29818 29928 + exon coding_transcript
8889952 8890062 29818 29928 + cds coding_transcript
8889448 8889951 29929 30432 + intron coding_transcript
8889625 8889732 30148 30255 + exon coding_transcript
8889625 8889732 30148 30255 + cds coding_transcript
8889448 8889624 30256 30432 + intron coding_transcript
8889227 8889447 30433 30653 + exon coding_transcript
8889227 8889447 30433 30653 + cds coding_transcript
8889227 8889447 30433 30653 + exon coding_transcript
8889227 8889447 30433 30653 + cds coding_transcript
8889173 8889226 30654 30707 + intron coding_transcript
8889173 8889226 30654 30707 + intron coding_transcript
8888695 8889172 30708 31185 + exon coding_transcript
8888695 8889172 30708 31185 + cds coding_transcript
8888695 8889172 30708 31185 + exon coding_transcript
8888695 8889172 30708 31185 + cds coding_transcript
8888641 8888694 31186 31239 + intron coding_transcript
8888641 8888694 31186 31239 + intron coding_transcript
8888478 8888640 31240 31402 + exon coding_transcript
8888478 8888640 31240 31402 + cds coding_transcript
8888478 8888640 31240 31402 + exon coding_transcript
8888478 8888640 31240 31402 + cds coding_transcript
8888420 8888477 31403 31460 + intron coding_transcript
8888420 8888477 31403 31460 + intron coding_transcript
8888147 8888419 31461 31733 + exon coding_transcript
8888147 8888419 31461 31733 + cds coding_transcript
8888147 8888419 31461 31733 + exon coding_transcript
8888147 8888419 31461 31733 + cds coding_transcript
8888084 8888146 31734 31796 + intron coding_transcript
8888084 8888146 31734 31796 + intron coding_transcript
8887788 8888083 31797 33154 + exon coding_transcript
8887788 8888083 31797 33154 + cds coding_transcript
8887788 8888083 31797 33154 + exon coding_transcript
8887788 8888083 31797 33154 + cds coding_transcript
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG
1482 1541 32090 32149 + cds 2xTY1 CLC
1548 2264 32156 32872 + cds SGFP CLC
2271 2312 32879 32920 + cds V5 CLC
2313 2336 32921 32944 + cds Precision cut site CLC
2337 2357 32945 32965 + cds TEV CLC
2358 2429 32966 33037 + cds BLRP CLC
3813 3846 33045 33078 + misc_recomb FRT CLC
dmel-5.43-3L
8884690 8887410 33532 36252 - gene Mcm7 coding_transcript
8881245 8881733 39209 39697 + gene CG43169 coding_transcript

Sets(click to hide details)

Oligos(click to hide details)

Name/Sequence Export
TrpA1[32089]::S000169_fly_pretag_rev
GATACACAGATTTTGTTATAAAGCCAAGTTCCTTCGAACGAAGGGATCTActtgtcgtcgtcatccttgtagtca
 fasta Fasta
TrpA1[32089]::S000169_fly_pretag_fwd
CGCGAGTCCGGAATAAACTCCGAGCCGCCCTGAGCTTCAATAAGAGCATGgaagtgcataccaatcaggacccgc
 fasta Fasta