Clone: 3622867014928135 B02
Tagged gene: pigeon
Identifier: FBgn0010309
| Clone | FlyFos026850(pRedFlp-Hgr)(pigeon[32405]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2L | ||||||||
| 19179749 | 19181702 | 22572 | 24525 | - | gene | CG17568 | coding_transcript | |
| 19182184 | 19182659 | 25007 | 25482 | - | gene | CG42688 | coding_transcript | |
| 19183091 | 19183613 | 25914 | 26436 | - | gene | CG17567 | coding_transcript | |
| 19183970 | 19185724 | 26793 | 28547 | - | gene | gammaTub37C | coding_transcript | |
| 19186036 | 19189938 | 28859 | 33823 | + | gene | pigeon | coding_transcript | |
| 19186036 | 19189938 | 28859 | 33823 | + | mrna | FBtr0081194 | coding_transcript | |
| 19186036 | 19189938 | 28859 | 33823 | + | mrna | FBtr0302561 | coding_transcript | |
| 19186036 | 19186192 | 28859 | 29015 | + | exon | coding_transcript | ||
| 19186036 | 19186192 | 28859 | 29015 | + | exon | coding_transcript | ||
| 19186036 | 19186128 | 28859 | 28951 | + | five_prime_utr | coding_transcript | ||
| 19186036 | 19186128 | 28859 | 28951 | + | five_prime_utr | coding_transcript | ||
| 19186129 | 19186192 | 28952 | 29015 | + | cds | coding_transcript | ||
| 19186129 | 19186192 | 28952 | 29015 | + | cds | coding_transcript | ||
| 19186193 | 19186250 | 29016 | 29073 | + | intron | coding_transcript | ||
| 19186193 | 19186250 | 29016 | 29073 | + | intron | coding_transcript | ||
| 19186251 | 19186655 | 29074 | 29478 | + | exon | coding_transcript | ||
| 19186251 | 19186655 | 29074 | 29478 | + | cds | coding_transcript | ||
| 19186251 | 19186655 | 29074 | 29478 | + | exon | coding_transcript | ||
| 19186251 | 19186655 | 29074 | 29478 | + | cds | coding_transcript | ||
| 19186656 | 19186718 | 29479 | 29541 | + | intron | coding_transcript | ||
| 19186656 | 19186718 | 29479 | 29541 | + | intron | coding_transcript | ||
| 19186719 | 19187020 | 29542 | 29843 | + | exon | coding_transcript | ||
| 19186719 | 19187020 | 29542 | 29843 | + | cds | coding_transcript | ||
| 19186719 | 19187020 | 29542 | 29843 | + | exon | coding_transcript | ||
| 19186719 | 19187020 | 29542 | 29843 | + | cds | coding_transcript | ||
| 19187021 | 19187078 | 29844 | 29901 | + | intron | coding_transcript | ||
| 19187021 | 19187078 | 29844 | 29901 | + | intron | coding_transcript | ||
| 19187079 | 19188242 | 29902 | 31065 | + | exon | coding_transcript | ||
| 19187079 | 19188242 | 29902 | 31065 | + | cds | coding_transcript | ||
| 19187079 | 19188242 | 29902 | 31065 | + | exon | coding_transcript | ||
| 19187079 | 19188242 | 29902 | 31065 | + | cds | coding_transcript | ||
| 19188243 | 19188298 | 31066 | 31121 | + | intron | coding_transcript | ||
| 19188243 | 19188298 | 31066 | 31121 | + | intron | coding_transcript | ||
| 19188299 | 19188531 | 31122 | 31354 | + | exon | coding_transcript | ||
| 19188299 | 19188531 | 31122 | 31354 | + | cds | coding_transcript | ||
| 19188299 | 19188531 | 31122 | 31354 | + | exon | coding_transcript | ||
| 19188299 | 19188531 | 31122 | 31354 | + | cds | coding_transcript | ||
| 19188532 | 19188590 | 31355 | 31413 | + | intron | coding_transcript | ||
| 19188532 | 19188590 | 31355 | 31413 | + | intron | coding_transcript | ||
| 19188591 | 19188805 | 31414 | 31628 | + | exon | coding_transcript | ||
| 19188591 | 19188805 | 31414 | 31628 | + | cds | coding_transcript | ||
| 19188591 | 19188805 | 31414 | 31628 | + | exon | coding_transcript | ||
| 19188591 | 19188805 | 31414 | 31628 | + | cds | coding_transcript | ||
| 19188806 | 19188875 | 31629 | 31698 | + | intron | coding_transcript | ||
| 19188806 | 19188875 | 31629 | 31698 | + | intron | coding_transcript | ||
| 19188876 | 19189100 | 31699 | 31923 | + | exon | coding_transcript | ||
| 19188876 | 19189100 | 31699 | 31923 | + | cds | coding_transcript | ||
| 19188876 | 19189100 | 31699 | 31923 | + | exon | coding_transcript | ||
| 19188876 | 19189100 | 31699 | 31923 | + | cds | coding_transcript | ||
| 19189101 | 19189445 | 31924 | 32268 | + | intron | coding_transcript | ||
| 19189101 | 19189181 | 31924 | 32004 | + | intron | coding_transcript | ||
| 19189182 | 19189328 | 32005 | 32151 | + | exon | coding_transcript | ||
| 19189182 | 19189306 | 32005 | 32129 | + | cds | coding_transcript | ||
| 19189307 | 19189328 | 32130 | 32151 | + | three_prime_utr | coding_transcript | ||
| 19189329 | 19189445 | 32152 | 32268 | + | intron | coding_transcript | ||
| 19189446 | 19189938 | 32269 | 33823 | + | exon | coding_transcript | ||
| 19189446 | 19189938 | 32269 | 33823 | + | exon | coding_transcript | ||
| 19189446 | 19189938 | 32269 | 33823 | + | three_prime_utr | coding_transcript | ||
| 19189446 | 19189585 | 32269 | 33470 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 32406 | 32465 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 32472 | 33188 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 33195 | 33236 | + | cds | V5 | CLC | |
| 2313 | 2336 | 33237 | 33260 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 33261 | 33281 | + | cds | TEV | CLC | |
| 2358 | 2429 | 33282 | 33353 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 33361 | 33394 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-2L | ||||||||
| 19189586 | 19189938 | 33471 | 33823 | + | three_prime_utr | coding_transcript | ||
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
pigeon[32405]::S000169_fly_pretag_fwd
TGCTTATTGAAACTACTCTAAGCTCCATCGATCAGCTGAAACTGGAGGCTgaagtgcataccaatcaggacccgc
|
Fasta
|
|
pigeon[32405]::S000169_fly_pretag_rev
CTTGATAATTTGACACAATACTTCATTAGTTACTCTTAACATTAAATTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|