Clone: 5835759330954416 A10
Tagged gene: CG9368
Identifier: FBgn0036890
| Clone | FlyFos026765(pRedFlp-Hgr)(CG9368[20483]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 19605560 | 19606589 | 9973 | 11002 | - | gene | CG9376 | coding_transcript | |
| 19600948 | 19605293 | 11269 | 15614 | + | gene | Lon | coding_transcript | |
| 19599310 | 19601468 | 15094 | 17252 | - | gene | CG9372 | coding_transcript | |
| 19597498 | 19599190 | 17372 | 19064 | + | gene | lush | coding_transcript | |
| 19594736 | 19597220 | 19342 | 22888 | - | gene | CG9368 | coding_transcript | |
| 19594736 | 19597220 | 19342 | 22888 | - | mrna | FBtr0074942 | coding_transcript | |
| 19594754 | 19597220 | 19342 | 22870 | - | mrna | FBtr0074943 | coding_transcript | |
| 19594755 | 19597220 | 19342 | 22869 | - | mrna | FBtr0074944 | coding_transcript | |
| 19595142 | 19597220 | 19342 | 22482 | - | exon | coding_transcript | ||
| 19595278 | 19597220 | 19342 | 22346 | - | three_prime_utr | coding_transcript | ||
| 19595756 | 19597220 | 19342 | 21868 | - | exon | coding_transcript | ||
| 19595771 | 19597220 | 19342 | 21853 | - | exon | coding_transcript | ||
| 19596082 | 19597220 | 19342 | 20480 | - | three_prime_utr | coding_transcript | ||
| 19596082 | 19597220 | 19342 | 20480 | - | three_prime_utr | coding_transcript | ||
| 19595756 | 19596081 | 20481 | 21868 | - | cds | coding_transcript | ||
| 19595771 | 19596081 | 20481 | 21853 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 20557 | 20590 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 20598 | 20669 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 20670 | 20690 | - | cds | TEV | CLC | |
| 2313 | 2336 | 20691 | 20714 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 20715 | 20756 | - | cds | V5 | CLC | |
| 1548 | 2264 | 20763 | 21479 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 21486 | 21545 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 19595161 | 19595770 | 21854 | 22463 | - | intron | coding_transcript | ||
| 19595161 | 19595755 | 21869 | 22463 | - | intron | coding_transcript | ||
| 19595142 | 19595277 | 22347 | 22482 | - | cds | coding_transcript | ||
| 19595142 | 19595160 | 22464 | 22482 | - | exon | coding_transcript | ||
| 19595142 | 19595160 | 22464 | 22482 | - | cds | coding_transcript | ||
| 19595142 | 19595160 | 22464 | 22482 | - | exon | coding_transcript | ||
| 19595142 | 19595160 | 22464 | 22482 | - | cds | coding_transcript | ||
| 19595077 | 19595141 | 22483 | 22547 | - | intron | coding_transcript | ||
| 19595077 | 19595141 | 22483 | 22547 | - | intron | coding_transcript | ||
| 19595077 | 19595141 | 22483 | 22547 | - | intron | coding_transcript | ||
| 19594736 | 19595076 | 22548 | 22888 | - | exon | coding_transcript | ||
| 19594754 | 19595076 | 22548 | 22870 | - | exon | coding_transcript | ||
| 19594755 | 19595076 | 22548 | 22869 | - | exon | coding_transcript | ||
| 19594873 | 19595076 | 22548 | 22751 | - | cds | coding_transcript | ||
| 19594873 | 19595076 | 22548 | 22751 | - | cds | coding_transcript | ||
| 19594877 | 19595076 | 22548 | 22747 | - | cds | coding_transcript | ||
| 19594754 | 19594876 | 22748 | 22870 | - | five_prime_utr | coding_transcript | ||
| 19594736 | 19594872 | 22752 | 22888 | - | five_prime_utr | coding_transcript | ||
| 19594755 | 19594872 | 22752 | 22869 | - | five_prime_utr | coding_transcript | ||
| 19592187 | 19594482 | 23142 | 25437 | - | gene | Taf6 | coding_transcript | |
| 19583873 | 19591855 | 25769 | 33751 | + | gene | ash1 | coding_transcript | |
| 19582172 | 19583615 | 34009 | 35452 | + | gene | CG14100 | coding_transcript | |
| 19579355 | 19582211 | 35413 | 38269 | - | gene | CG9330 | coding_transcript | |
| 19578193 | 19579328 | 38296 | 39431 | + | gene | CG9231 | coding_transcript | |
Sets
Oligos
| Name/Sequence | Export |
|---|---|
|
CG9368[20483]::S000169_fly_pretag_fwd
AGGGAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACgaagtgcataccaatcaggacccgc
|
Fasta
|
|
CG9368[20483]::S000169_fly_pretag_rev
ATTATGTTTTCCCATTGCATGGACAACCATTGTCCATTATAGCTAGCTTActtgtcgtcgtcatccttgtagtca
|
Fasta
|