Clone: 5835759330954416 E09
Tagged gene: CG4658
Identifier: FBgn0032170
| Clone | FlyFos026754(pRedFlp-Hgr)(CG4658[17401]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2L | ||||||||
| 9964147 | 9967455 | 9664 | 12972 | + | gene | Dref | coding_transcript | |
| 9959248 | 9963767 | 13352 | 18933 | + | gene | CG5850 | coding_transcript | |
| 9957287 | 9960168 | 16951 | 20894 | - | gene | CG4658 | coding_transcript | |
| 9957287 | 9960168 | 16951 | 20894 | - | mrna | FBtr0079885 | coding_transcript | |
| 9957287 | 9960168 | 16951 | 20894 | - | mrna | FBtr0079886 | coding_transcript | |
| 9957297 | 9960168 | 16951 | 20884 | - | mrna | FBtr0079887 | coding_transcript | |
| 9959550 | 9960168 | 16951 | 18631 | - | exon | coding_transcript | ||
| 9959550 | 9960168 | 16951 | 18631 | - | exon | coding_transcript | ||
| 9959550 | 9960168 | 16951 | 18631 | - | exon | coding_transcript | ||
| 9959721 | 9960168 | 16951 | 17398 | - | three_prime_utr | coding_transcript | ||
| 9959721 | 9960168 | 16951 | 17398 | - | three_prime_utr | coding_transcript | ||
| 9959721 | 9960168 | 16951 | 17398 | - | three_prime_utr | coding_transcript | ||
| 9959550 | 9959720 | 17399 | 18631 | - | cds | coding_transcript | ||
| 9959550 | 9959720 | 17399 | 18631 | - | cds | coding_transcript | ||
| 9959550 | 9959720 | 17399 | 18631 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 17475 | 17508 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 17516 | 17587 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 17588 | 17608 | - | cds | TEV | CLC | |
| 2313 | 2336 | 17609 | 17632 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 17633 | 17674 | - | cds | V5 | CLC | |
| 1548 | 2264 | 17681 | 18397 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 18404 | 18463 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2L | ||||||||
| 9959112 | 9959549 | 18632 | 19069 | - | intron | coding_transcript | ||
| 9959112 | 9959549 | 18632 | 19069 | - | intron | coding_transcript | ||
| 9959112 | 9959549 | 18632 | 19069 | - | intron | coding_transcript | ||
| 9958940 | 9959111 | 19070 | 19241 | - | exon | coding_transcript | ||
| 9958940 | 9959111 | 19070 | 19241 | - | cds | coding_transcript | ||
| 9958940 | 9959111 | 19070 | 19241 | - | exon | coding_transcript | ||
| 9958940 | 9959111 | 19070 | 19241 | - | cds | coding_transcript | ||
| 9958940 | 9959111 | 19070 | 19241 | - | exon | coding_transcript | ||
| 9958940 | 9959111 | 19070 | 19241 | - | cds | coding_transcript | ||
| 9958886 | 9958939 | 19242 | 19295 | - | intron | coding_transcript | ||
| 9958886 | 9958939 | 19242 | 19295 | - | intron | coding_transcript | ||
| 9958886 | 9958939 | 19242 | 19295 | - | intron | coding_transcript | ||
| 9957960 | 9958885 | 19296 | 20221 | - | exon | coding_transcript | ||
| 9957960 | 9958885 | 19296 | 20221 | - | cds | coding_transcript | ||
| 9957960 | 9958885 | 19296 | 20221 | - | exon | coding_transcript | ||
| 9957960 | 9958885 | 19296 | 20221 | - | cds | coding_transcript | ||
| 9957960 | 9958885 | 19296 | 20221 | - | exon | coding_transcript | ||
| 9957960 | 9958885 | 19296 | 20221 | - | cds | coding_transcript | ||
| 9957901 | 9957959 | 20222 | 20280 | - | intron | coding_transcript | ||
| 9957901 | 9957959 | 20222 | 20280 | - | intron | coding_transcript | ||
| 9957901 | 9957959 | 20222 | 20280 | - | intron | coding_transcript | ||
| 9957287 | 9957900 | 20281 | 20894 | - | exon | coding_transcript | ||
| 9957403 | 9957900 | 20281 | 20778 | - | exon | coding_transcript | ||
| 9957429 | 9957900 | 20281 | 20752 | - | exon | coding_transcript | ||
| 9957589 | 9957900 | 20281 | 20592 | - | cds | coding_transcript | ||
| 9957589 | 9957900 | 20281 | 20592 | - | cds | coding_transcript | ||
| 9957589 | 9957900 | 20281 | 20592 | - | cds | coding_transcript | ||
| 9957287 | 9957588 | 20593 | 20894 | - | five_prime_utr | coding_transcript | ||
| 9957403 | 9957588 | 20593 | 20778 | - | five_prime_utr | coding_transcript | ||
| 9957429 | 9957588 | 20593 | 20752 | - | five_prime_utr | coding_transcript | ||
| 9957330 | 9957428 | 20753 | 20851 | - | intron | coding_transcript | ||
| 9957330 | 9957402 | 20779 | 20851 | - | intron | coding_transcript | ||
| 9957287 | 9957329 | 20852 | 20894 | - | exon | coding_transcript | ||
| 9957287 | 9957329 | 20852 | 20894 | - | five_prime_utr | coding_transcript | ||
| 9957297 | 9957329 | 20852 | 20884 | - | exon | coding_transcript | ||
| 9957297 | 9957329 | 20852 | 20884 | - | five_prime_utr | coding_transcript | ||
| 9956148 | 9957019 | 21162 | 22033 | + | gene | CG5846 | coding_transcript | |
| 9954449 | 9956176 | 22005 | 23732 | - | gene | CG4709 | coding_transcript | |
| 9952428 | 9954180 | 24001 | 25753 | + | gene | CG13126 | coding_transcript | |
| 9940769 | 9947442 | 30739 | 37412 | + | gene | CG5853 | coding_transcript | |
| 9938865 | 9941099 | 37082 | 39316 | - | gene | CG4619 | coding_transcript | |
| 9938170 | 9938787 | 39394 | 40011 | + | gene | Apf | coding_transcript | |
| 9934767 | 9938142 | 40039 | 43414 | + | gene | CG31712 | coding_transcript | |
| 9932587 | 9933092 | 45089 | 45594 | + | gene | Cpr30F | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG4658[17401]::S000169_fly_pretag_fwd
ATCCGGATCGATATCTCCTCGAGCTGGGCGGCAGGCAGAACTACAACAATgaagtgcataccaatcaggacccgc
|
Fasta
|
|
CG4658[17401]::S000169_fly_pretag_rev
TTCCCCATCCATTGCTTTTAGAATACATATATGCGCAGCAGTCGCGATCActtgtcgtcgtcatccttgtagtca
|
Fasta
|