Clone: 5835759330954416 A09
Tagged gene: alpha-Adaptin
Identifier: FBgn0263350
| Clone | FlyFos026749(pRedFlp-Hgr)(alpha-Adaptin[22178]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2L | ||||||||
| 404305 | 407969 | 17093 | 20757 | + | gene | RpI135 | coding_transcript | |
| 408030 | 414775 | 20818 | 28625 | - | gene | alpha-Adaptin | coding_transcript | |
| 408030 | 414775 | 20818 | 28625 | - | mrna | FBtr0089488 | coding_transcript | |
| 408030 | 409465 | 20818 | 23315 | - | exon | coding_transcript | ||
| 408030 | 409387 | 20818 | 22175 | - | three_prime_utr | coding_transcript | ||
| 408876 | 412885 | 21664 | 26735 | - | mrna | FBtr0089489 | coding_transcript | |
| 408876 | 409465 | 21664 | 23315 | - | exon | coding_transcript | ||
| 408876 | 409387 | 21664 | 22175 | - | three_prime_utr | coding_transcript | ||
| 409388 | 409465 | 22176 | 23315 | - | cds | coding_transcript | ||
| 409388 | 409465 | 22176 | 23315 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 22252 | 22285 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 22293 | 22364 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 22365 | 22385 | - | cds | TEV | CLC | |
| 2313 | 2336 | 22386 | 22409 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 22410 | 22451 | - | cds | V5 | CLC | |
| 1548 | 2264 | 22458 | 23174 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 23181 | 23240 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2L | ||||||||
| 409466 | 409531 | 23316 | 23381 | - | intron | coding_transcript | ||
| 409466 | 409531 | 23316 | 23381 | - | intron | coding_transcript | ||
| 409532 | 409736 | 23382 | 23586 | - | exon | coding_transcript | ||
| 409532 | 409736 | 23382 | 23586 | - | cds | coding_transcript | ||
| 409532 | 409736 | 23382 | 23586 | - | exon | coding_transcript | ||
| 409532 | 409736 | 23382 | 23586 | - | cds | coding_transcript | ||
| 409737 | 409789 | 23587 | 23639 | - | intron | coding_transcript | ||
| 409737 | 409789 | 23587 | 23639 | - | intron | coding_transcript | ||
| 409790 | 410073 | 23640 | 23923 | - | exon | coding_transcript | ||
| 409790 | 410073 | 23640 | 23923 | - | cds | coding_transcript | ||
| 409790 | 410073 | 23640 | 23923 | - | exon | coding_transcript | ||
| 409790 | 410073 | 23640 | 23923 | - | cds | coding_transcript | ||
| 410074 | 410126 | 23924 | 23976 | - | intron | coding_transcript | ||
| 410074 | 410126 | 23924 | 23976 | - | intron | coding_transcript | ||
| 410127 | 411060 | 23977 | 24910 | - | exon | coding_transcript | ||
| 410127 | 411060 | 23977 | 24910 | - | cds | coding_transcript | ||
| 410127 | 411060 | 23977 | 24910 | - | exon | coding_transcript | ||
| 410127 | 411060 | 23977 | 24910 | - | cds | coding_transcript | ||
| 411061 | 411128 | 24911 | 24978 | - | intron | coding_transcript | ||
| 411061 | 411128 | 24911 | 24978 | - | intron | coding_transcript | ||
| 411129 | 411718 | 24979 | 25568 | - | exon | coding_transcript | ||
| 411129 | 411718 | 24979 | 25568 | - | cds | coding_transcript | ||
| 411129 | 411718 | 24979 | 25568 | - | exon | coding_transcript | ||
| 411129 | 411718 | 24979 | 25568 | - | cds | coding_transcript | ||
| 411719 | 411781 | 25569 | 25631 | - | intron | coding_transcript | ||
| 411719 | 411781 | 25569 | 25631 | - | intron | coding_transcript | ||
| 411782 | 412237 | 25632 | 26087 | - | exon | coding_transcript | ||
| 411782 | 412237 | 25632 | 26087 | - | cds | coding_transcript | ||
| 411782 | 412237 | 25632 | 26087 | - | exon | coding_transcript | ||
| 411782 | 412237 | 25632 | 26087 | - | cds | coding_transcript | ||
| 412238 | 412446 | 26088 | 26296 | - | intron | coding_transcript | ||
| 412238 | 412446 | 26088 | 26296 | - | intron | coding_transcript | ||
| 412447 | 412658 | 26297 | 26508 | - | exon | coding_transcript | ||
| 412447 | 412658 | 26297 | 26508 | - | cds | coding_transcript | ||
| 412447 | 412658 | 26297 | 26508 | - | exon | coding_transcript | ||
| 412447 | 412658 | 26297 | 26508 | - | cds | coding_transcript | ||
| 412659 | 413395 | 26509 | 27245 | - | intron | coding_transcript | ||
| 412659 | 412724 | 26509 | 26574 | - | intron | coding_transcript | ||
| 412725 | 412885 | 26575 | 26735 | - | exon | coding_transcript | ||
| 412725 | 412824 | 26575 | 26674 | - | cds | coding_transcript | ||
| 412825 | 412885 | 26675 | 26735 | - | five_prime_utr | coding_transcript | ||
| 413396 | 413654 | 27246 | 27504 | - | exon | coding_transcript | ||
| 413396 | 413459 | 27246 | 27309 | - | cds | coding_transcript | ||
| 413460 | 413654 | 27310 | 27504 | - | five_prime_utr | coding_transcript | ||
| 413655 | 414442 | 27505 | 28292 | - | intron | coding_transcript | ||
| 414443 | 414775 | 28293 | 28625 | - | exon | coding_transcript | ||
| 414443 | 414775 | 28293 | 28625 | - | five_prime_utr | coding_transcript | ||
| 415069 | 418536 | 28919 | 32386 | + | gene | ebi | coding_transcript | |
| 418434 | 419642 | 32284 | 33492 | - | gene | CG13690 | coding_transcript | |
| 419931 | 420706 | 33781 | 34556 | + | gene | RpLP1 | coding_transcript | |
| 420887 | 421407 | 34737 | 35257 | - | gene | CG11885 | coding_transcript | |
| 421800 | 422435 | 35650 | 36285 | + | gene | CG13692 | coding_transcript | |
| 423452 | 425291 | 37302 | 39141 | + | gene | BBS8 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
alpha-Adaptin[22178]::S000169_fly_pretag_rev
TGGCTTCGCAGCTCCGTCTCCATCACCCCGTCCATGATTGTTGTGGCTTActtgtcgtcgtcatccttgtagtca
|
Fasta
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alpha-Adaptin[22178]::S000169_fly_pretag_fwd
GCAAGGAGACCGTAACTCGGGAAATCTGCGATCTGTTGACGGATCAATTCgaagtgcataccaatcaggacccgc
|
Fasta
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