Clone: 14365767356821757 B11
Tagged gene: pallidin
Identifier: FBgn0036192
Clone | FlyFos025906(pRedFlp-Hgr)(pallidin[30567]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
---|---|
Library | FlyFos 5.43 D.mel in E. coli EPI300 |
Genome | Species: Drosophila melanogaster, Release: 5.43 |
Validation(click to hide details)
Type | Status | Download / View |
---|---|---|
Grows in selection | good | |
NGS-based tag validation | good | [view] |
Genes in pFlyFos vector(click to hide details)
Gene | Clone relative | Genome relative | |||||
---|---|---|---|---|---|---|---|
Name | Length | Start | End | Strand | Start | End | Strand |
DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
---|---|---|---|---|---|---|---|---|
pFlyFos | ||||||||
1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
dmel-5.43-3L | ||||||||
11675126 | 11676905 | 22578 | 24357 | + | gene | TfIIEalpha | coding_transcript | |
11677084 | 11683255 | 24536 | 31769 | + | gene | Sug | coding_transcript | |
11682731 | 11684499 | 30183 | 33013 | - | gene | pallidin | coding_transcript | |
11682731 | 11684499 | 30183 | 33013 | - | mrna | FBtr0300097 | coding_transcript | |
11682731 | 11684499 | 30183 | 33013 | - | mrna | FBtr0300726 | coding_transcript | |
11682731 | 11684353 | 30183 | 32867 | - | mrna | FBtr0300725 | coding_transcript | |
11682731 | 11683208 | 30183 | 31722 | - | exon | coding_transcript | ||
11682731 | 11683208 | 30183 | 31722 | - | exon | coding_transcript | ||
11682731 | 11683208 | 30183 | 31722 | - | three_prime_utr | coding_transcript | ||
11682731 | 11683208 | 30183 | 31722 | - | exon | coding_transcript | ||
11682731 | 11683112 | 30183 | 30564 | - | three_prime_utr | coding_transcript | ||
11682731 | 11683112 | 30183 | 30564 | - | three_prime_utr | coding_transcript | ||
11683113 | 11683208 | 30565 | 31722 | - | cds | coding_transcript | ||
11683113 | 11683208 | 30565 | 31722 | - | cds | coding_transcript | ||
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
2437 | 2470 | 30641 | 30674 | - | misc_recomb | FRT | CLC | |
2358 | 2429 | 30682 | 30753 | - | cds | BLRP | CLC | |
2337 | 2357 | 30754 | 30774 | - | cds | TEV | CLC | |
2313 | 2336 | 30775 | 30798 | - | cds | Precision cut site | CLC | |
2271 | 2312 | 30799 | 30840 | - | cds | V5 | CLC | |
1548 | 2264 | 30847 | 31563 | - | cds | SGFP | CLC | |
1482 | 1541 | 31570 | 31629 | - | cds | 2xTY1 | CLC | |
dmel-5.43-3L | ||||||||
11683209 | 11683325 | 31723 | 31839 | - | intron | coding_transcript | ||
11683209 | 11683325 | 31723 | 31839 | - | intron | coding_transcript | ||
11683209 | 11683325 | 31723 | 31839 | - | intron | coding_transcript | ||
11683326 | 11683412 | 31840 | 31926 | - | exon | coding_transcript | ||
11683326 | 11683412 | 31840 | 31926 | - | cds | coding_transcript | ||
11683326 | 11683412 | 31840 | 31926 | - | exon | coding_transcript | ||
11683326 | 11683412 | 31840 | 31926 | - | three_prime_utr | coding_transcript | ||
11683326 | 11683412 | 31840 | 31926 | - | exon | coding_transcript | ||
11683326 | 11683412 | 31840 | 31926 | - | cds | coding_transcript | ||
11683413 | 11683996 | 31927 | 32510 | - | intron | coding_transcript | ||
11683413 | 11683996 | 31927 | 32510 | - | intron | coding_transcript | ||
11683413 | 11683996 | 31927 | 32510 | - | intron | coding_transcript | ||
11683997 | 11684349 | 32511 | 32863 | - | exon | coding_transcript | ||
11683997 | 11684135 | 32511 | 32649 | - | three_prime_utr | coding_transcript | ||
11683997 | 11684081 | 32511 | 32595 | - | exon | coding_transcript | ||
11683997 | 11684081 | 32511 | 32595 | - | cds | coding_transcript | ||
11683997 | 11684081 | 32511 | 32595 | - | exon | coding_transcript | ||
11683997 | 11684081 | 32511 | 32595 | - | cds | coding_transcript | ||
11684082 | 11684139 | 32596 | 32653 | - | intron | coding_transcript | ||
11684082 | 11684139 | 32596 | 32653 | - | intron | coding_transcript | ||
11684136 | 11684349 | 32650 | 32863 | - | cds | coding_transcript | ||
11684140 | 11684353 | 32654 | 32867 | - | exon | coding_transcript | ||
11684140 | 11684349 | 32654 | 32863 | - | exon | coding_transcript | ||
11684140 | 11684349 | 32654 | 32863 | - | cds | coding_transcript | ||
11684140 | 11684234 | 32654 | 32748 | - | cds | coding_transcript | ||
11684235 | 11684353 | 32749 | 32867 | - | five_prime_utr | coding_transcript | ||
11684350 | 11684407 | 32864 | 32921 | - | intron | coding_transcript | ||
11684350 | 11684407 | 32864 | 32921 | - | intron | coding_transcript | ||
11684408 | 11684499 | 32922 | 33013 | - | exon | coding_transcript | ||
11684408 | 11684499 | 32922 | 33013 | - | exon | coding_transcript | ||
11684408 | 11684433 | 32922 | 32947 | - | cds | coding_transcript | ||
11684408 | 11684433 | 32922 | 32947 | - | cds | coding_transcript | ||
11684434 | 11684499 | 32948 | 33013 | - | five_prime_utr | coding_transcript | ||
11684434 | 11684499 | 32948 | 33013 | - | five_prime_utr | coding_transcript | ||
11684747 | 11685857 | 33261 | 34371 | + | gene | CG14135 | coding_transcript | |
11686979 | 11690086 | 35493 | 38600 | - | gene | CG11652 | coding_transcript | |
11690226 | 11692363 | 38740 | 40877 | - | gene | CG6053 | coding_transcript |
Sets(click to hide details)
Oligos(click to hide details)
Name/Sequence | Export |
---|---|
pallidin[30567]::S000169_fly_pretag_fwd
AGCGGAAACTCGAGAGGCTACAGCACGAGGAGTCGCTCATTGGCAGCCAGgaagtgcataccaatcaggacccgc
|
Fasta |
pallidin[30567]::S000169_fly_pretag_rev
GAAGATTCCGGGAGACACCTGGTTAGGTGTTGACTGATCCCCTTCGTCTActtgtcgtcgtcatccttgtagtca
|
Fasta |