Clone: 6536462692990512 B02
Tagged gene: Sh3beta
Identifier: FBgn0035772
| Clone | FlyFos025304(pRedFlp-Hgr)(Sh3beta[33629]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 7338798 | 7340223 | 11772 | 13197 | - | gene | CG14834 | coding_transcript | |
| 7340410 | 7341125 | 13384 | 14099 | - | gene | Srp19 | coding_transcript | |
| 7341415 | 7346722 | 14389 | 19696 | + | gene | qm | coding_transcript | |
| 7346678 | 7349796 | 19652 | 22770 | - | gene | CTCF | coding_transcript | |
| 7350375 | 7353363 | 23349 | 26337 | - | gene | pst | coding_transcript | |
| 7353663 | 7357466 | 26637 | 30440 | + | gene | sec63 | coding_transcript | |
| 7357900 | 7362357 | 30874 | 36393 | - | gene | Sh3beta | coding_transcript | |
| 7357900 | 7362344 | 30874 | 36380 | - | mrna | FBtr0302547 | coding_transcript | |
| 7357900 | 7358064 | 30874 | 31038 | - | exon | coding_transcript | ||
| 7357900 | 7357959 | 30874 | 30933 | - | three_prime_utr | coding_transcript | ||
| 7357960 | 7358064 | 30934 | 31038 | - | cds | coding_transcript | ||
| 7358065 | 7359541 | 31039 | 32515 | - | intron | coding_transcript | ||
| 7358346 | 7362344 | 31320 | 36380 | - | mrna | FBtr0302548 | coding_transcript | |
| 7358346 | 7359208 | 31320 | 32182 | - | exon | coding_transcript | ||
| 7358346 | 7359208 | 31320 | 32182 | - | cds | coding_transcript | ||
| 7359209 | 7359261 | 32183 | 32235 | - | intron | coding_transcript | ||
| 7359262 | 7359310 | 32236 | 32284 | - | exon | coding_transcript | ||
| 7359262 | 7359310 | 32236 | 32284 | - | cds | coding_transcript | ||
| 7359311 | 7359541 | 32285 | 32515 | - | intron | coding_transcript | ||
| 7359542 | 7359616 | 32516 | 32590 | - | exon | coding_transcript | ||
| 7359542 | 7359616 | 32516 | 32590 | - | cds | coding_transcript | ||
| 7359542 | 7359616 | 32516 | 32590 | - | exon | coding_transcript | ||
| 7359542 | 7359616 | 32516 | 32590 | - | cds | coding_transcript | ||
| 7359617 | 7360658 | 32591 | 34694 | - | intron | coding_transcript | ||
| 7359617 | 7360658 | 32591 | 34694 | - | intron | coding_transcript | ||
| 7359941 | 7362357 | 32915 | 36393 | - | mrna | FBtr0076872 | coding_transcript | |
| 7359941 | 7362344 | 32915 | 36380 | - | mrna | FBtr0076873 | coding_transcript | |
| 7359941 | 7361290 | 32915 | 35326 | - | mrna | FBtr0302546 | coding_transcript | |
| 7359941 | 7361084 | 32915 | 35120 | - | exon | coding_transcript | ||
| 7359941 | 7361084 | 32915 | 35120 | - | exon | coding_transcript | ||
| 7359941 | 7361084 | 32915 | 35120 | - | exon | coding_transcript | ||
| 7359941 | 7360652 | 32915 | 33626 | - | three_prime_utr | coding_transcript | ||
| 7359941 | 7360652 | 32915 | 33626 | - | three_prime_utr | coding_transcript | ||
| 7359941 | 7360652 | 32915 | 33626 | - | three_prime_utr | coding_transcript | ||
| 7360653 | 7361084 | 33627 | 35120 | - | cds | coding_transcript | ||
| 7360653 | 7361084 | 33627 | 35120 | - | cds | coding_transcript | ||
| 7360653 | 7361084 | 33627 | 35120 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 33703 | 33736 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 33744 | 33815 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 33816 | 33836 | - | cds | TEV | CLC | |
| 2313 | 2336 | 33837 | 33860 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 33861 | 33902 | - | cds | V5 | CLC | |
| 1548 | 2264 | 33909 | 34625 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 34632 | 34691 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 7360659 | 7361084 | 34695 | 35120 | - | exon | coding_transcript | ||
| 7360659 | 7361084 | 34695 | 35120 | - | cds | coding_transcript | ||
| 7360659 | 7361084 | 34695 | 35120 | - | exon | coding_transcript | ||
| 7360659 | 7361084 | 34695 | 35120 | - | cds | coding_transcript | ||
| 7361085 | 7361989 | 35121 | 36025 | - | intron | coding_transcript | ||
| 7361085 | 7361989 | 35121 | 36025 | - | intron | coding_transcript | ||
| 7361085 | 7361989 | 35121 | 36025 | - | intron | coding_transcript | ||
| 7361085 | 7361989 | 35121 | 36025 | - | intron | coding_transcript | ||
| 7361085 | 7361162 | 35121 | 35198 | - | intron | coding_transcript | ||
| 7361163 | 7361290 | 35199 | 35326 | - | exon | coding_transcript | ||
| 7361163 | 7361171 | 35199 | 35207 | - | cds | coding_transcript | ||
| 7361172 | 7361290 | 35208 | 35326 | - | five_prime_utr | coding_transcript | ||
| 7361990 | 7362344 | 36026 | 36380 | - | exon | coding_transcript | ||
| 7361990 | 7362344 | 36026 | 36380 | - | exon | coding_transcript | ||
| 7361990 | 7362344 | 36026 | 36380 | - | exon | coding_transcript | ||
| 7361990 | 7362230 | 36026 | 36266 | - | exon | coding_transcript | ||
| 7361990 | 7362034 | 36026 | 36070 | - | cds | coding_transcript | ||
| 7361990 | 7362034 | 36026 | 36070 | - | cds | coding_transcript | ||
| 7361990 | 7362034 | 36026 | 36070 | - | cds | coding_transcript | ||
| 7361990 | 7362034 | 36026 | 36070 | - | cds | coding_transcript | ||
| 7362035 | 7362344 | 36071 | 36380 | - | five_prime_utr | coding_transcript | ||
| 7362035 | 7362344 | 36071 | 36380 | - | five_prime_utr | coding_transcript | ||
| 7362035 | 7362344 | 36071 | 36380 | - | five_prime_utr | coding_transcript | ||
| 7362035 | 7362230 | 36071 | 36266 | - | five_prime_utr | coding_transcript | ||
| 7362231 | 7362326 | 36267 | 36362 | - | intron | coding_transcript | ||
| 7362327 | 7362357 | 36363 | 36393 | - | exon | coding_transcript | ||
| 7362327 | 7362357 | 36363 | 36393 | - | five_prime_utr | coding_transcript | ||
| 7362900 | 7366958 | 36936 | 40994 | + | gene | akirin | coding_transcript | |
| 7367142 | 7374617 | 41178 | 48653 | - | gene | SMSr | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Sh3beta[33629]::S000169_fly_pretag_rev
TGTTGCGTCGTAACAGTTAACGGAAAATACGTGAAAATAGCTCAAGTTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
Sh3beta[33629]::S000169_fly_pretag_fwd
GCGATGGCGATGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTgaagtgcataccaatcaggacccgc
|
Fasta
|