Clone: 2840487120807852 A04
Tagged gene: dre4
Identifier: FBgn0002183
| Clone | FlyFos024758(pRedFlp-Hgr)(dre4[28385]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 1857167 | 1859047 | 13789 | 15669 | + | gene | CG12024 | coding_transcript | |
| 1859115 | 1862256 | 15737 | 18878 | - | gene | R | coding_transcript | |
| 1862881 | 1865309 | 19503 | 21931 | - | gene | HBS1 | coding_transcript | |
| 1865432 | 1867863 | 22054 | 24485 | + | gene | CG12025 | coding_transcript | |
| 1870019 | 1871564 | 26641 | 28186 | + | gene | CG13924 | coding_transcript | |
| 1871574 | 1876336 | 28196 | 34020 | - | gene | dre4 | coding_transcript | |
| 1871574 | 1876336 | 28196 | 34020 | - | mrna | FBtr0072864 | coding_transcript | |
| 1871574 | 1876336 | 28196 | 34020 | - | mrna | FBtr0072865 | coding_transcript | |
| 1871574 | 1871917 | 28196 | 29601 | - | exon | coding_transcript | ||
| 1871574 | 1871917 | 28196 | 29601 | - | exon | coding_transcript | ||
| 1871574 | 1871760 | 28196 | 28382 | - | three_prime_utr | coding_transcript | ||
| 1871574 | 1871760 | 28196 | 28382 | - | three_prime_utr | coding_transcript | ||
| 1871761 | 1871917 | 28383 | 29601 | - | cds | coding_transcript | ||
| 1871761 | 1871917 | 28383 | 29601 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 28459 | 28492 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 28500 | 28571 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 28572 | 28592 | - | cds | TEV | CLC | |
| 2313 | 2336 | 28593 | 28616 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 28617 | 28658 | - | cds | V5 | CLC | |
| 1548 | 2264 | 28665 | 29381 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 29388 | 29447 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3L | ||||||||
| 1871918 | 1872581 | 29602 | 30265 | - | intron | coding_transcript | ||
| 1871918 | 1872353 | 29602 | 30037 | - | intron | coding_transcript | ||
| 1872354 | 1872470 | 30038 | 30154 | - | exon | coding_transcript | ||
| 1872354 | 1872470 | 30038 | 30154 | - | cds | coding_transcript | ||
| 1872471 | 1872581 | 30155 | 30265 | - | intron | coding_transcript | ||
| 1872582 | 1872735 | 30266 | 30419 | - | exon | coding_transcript | ||
| 1872582 | 1872735 | 30266 | 30419 | - | cds | coding_transcript | ||
| 1872582 | 1872735 | 30266 | 30419 | - | exon | coding_transcript | ||
| 1872582 | 1872735 | 30266 | 30419 | - | cds | coding_transcript | ||
| 1872736 | 1872799 | 30420 | 30483 | - | intron | coding_transcript | ||
| 1872736 | 1872799 | 30420 | 30483 | - | intron | coding_transcript | ||
| 1872800 | 1873062 | 30484 | 30746 | - | exon | coding_transcript | ||
| 1872800 | 1873062 | 30484 | 30746 | - | cds | coding_transcript | ||
| 1872800 | 1873062 | 30484 | 30746 | - | exon | coding_transcript | ||
| 1872800 | 1873062 | 30484 | 30746 | - | cds | coding_transcript | ||
| 1873063 | 1873116 | 30747 | 30800 | - | intron | coding_transcript | ||
| 1873063 | 1873116 | 30747 | 30800 | - | intron | coding_transcript | ||
| 1873117 | 1873983 | 30801 | 31667 | - | exon | coding_transcript | ||
| 1873117 | 1873983 | 30801 | 31667 | - | cds | coding_transcript | ||
| 1873117 | 1873983 | 30801 | 31667 | - | exon | coding_transcript | ||
| 1873117 | 1873983 | 30801 | 31667 | - | cds | coding_transcript | ||
| 1873984 | 1874040 | 31668 | 31724 | - | intron | coding_transcript | ||
| 1873984 | 1874040 | 31668 | 31724 | - | intron | coding_transcript | ||
| 1874041 | 1875218 | 31725 | 32902 | - | exon | coding_transcript | ||
| 1874041 | 1875218 | 31725 | 32902 | - | cds | coding_transcript | ||
| 1874041 | 1875218 | 31725 | 32902 | - | exon | coding_transcript | ||
| 1874041 | 1875218 | 31725 | 32902 | - | cds | coding_transcript | ||
| 1875219 | 1875286 | 32903 | 32970 | - | intron | coding_transcript | ||
| 1875219 | 1875286 | 32903 | 32970 | - | intron | coding_transcript | ||
| 1875287 | 1875586 | 32971 | 33270 | - | exon | coding_transcript | ||
| 1875287 | 1875586 | 32971 | 33270 | - | cds | coding_transcript | ||
| 1875287 | 1875586 | 32971 | 33270 | - | exon | coding_transcript | ||
| 1875287 | 1875586 | 32971 | 33270 | - | cds | coding_transcript | ||
| 1875587 | 1875651 | 33271 | 33335 | - | intron | coding_transcript | ||
| 1875587 | 1875651 | 33271 | 33335 | - | intron | coding_transcript | ||
| 1875652 | 1875915 | 33336 | 33599 | - | exon | coding_transcript | ||
| 1875652 | 1875915 | 33336 | 33599 | - | cds | coding_transcript | ||
| 1875652 | 1875915 | 33336 | 33599 | - | exon | coding_transcript | ||
| 1875652 | 1875915 | 33336 | 33599 | - | cds | coding_transcript | ||
| 1875916 | 1876109 | 33600 | 33793 | - | intron | coding_transcript | ||
| 1875916 | 1876109 | 33600 | 33793 | - | intron | coding_transcript | ||
| 1876110 | 1876336 | 33794 | 34020 | - | exon | coding_transcript | ||
| 1876110 | 1876336 | 33794 | 34020 | - | exon | coding_transcript | ||
| 1876110 | 1876178 | 33794 | 33862 | - | cds | coding_transcript | ||
| 1876110 | 1876178 | 33794 | 33862 | - | cds | coding_transcript | ||
| 1876179 | 1876336 | 33863 | 34020 | - | five_prime_utr | coding_transcript | ||
| 1876179 | 1876336 | 33863 | 34020 | - | five_prime_utr | coding_transcript | ||
| 1876551 | 1883037 | 34235 | 40721 | - | gene | CG13937 | coding_transcript | |
| 1883892 | 1884885 | 41576 | 42569 | - | gene | Aprt | coding_transcript | |
Sets
Oligos
| Name/Sequence | Export |
|---|---|
|
dre4[28385]::S000169_fly_pretag_rev
AGATTACGAACGGAGTGCCACACAGGCTTGGCGACAGGAACAGCTCCCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
dre4[28385]::S000169_fly_pretag_fwd
CGCGGGATGACAGTCGCGACAATGGGCACAAGTCGAAGAAGTCGCGACATgaagtgcataccaatcaggacccgc
|
Fasta
|