Clone: 6005613252476711 D12
Tagged gene: cbx
Identifier: FBgn0011241
| Clone | FlyFos024314(pRedFlp-Hgr)(cbx[22626]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 5751325 | 5752081 | 21854 | 22610 | + | gene | CG30010 | coding_transcript | |
| 5752015 | 5762577 | 22544 | 34168 | - | gene | cbx | coding_transcript | |
| 5752015 | 5762577 | 22544 | 34168 | - | mrna | FBtr0088452 | coding_transcript | |
| 5752015 | 5753097 | 22544 | 24688 | - | mrna | FBtr0088453 | coding_transcript | |
| 5752015 | 5752574 | 22544 | 24165 | - | exon | coding_transcript | ||
| 5752015 | 5752574 | 22544 | 24165 | - | exon | coding_transcript | ||
| 5752015 | 5752094 | 22544 | 22623 | - | three_prime_utr | coding_transcript | ||
| 5752015 | 5752094 | 22544 | 22623 | - | three_prime_utr | coding_transcript | ||
| 5752023 | 5752081 | 22552 | 22610 | + | three_prime_utr | coding_transcript | ||
| 5752095 | 5752574 | 22624 | 24165 | - | cds | coding_transcript | ||
| 5752095 | 5752574 | 22624 | 24165 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 22700 | 22733 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 22741 | 22812 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 22813 | 22833 | - | cds | TEV | CLC | |
| 2313 | 2336 | 22834 | 22857 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 22858 | 22899 | - | cds | V5 | CLC | |
| 1548 | 2264 | 22906 | 23622 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 23629 | 23688 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 5752575 | 5752628 | 24166 | 24219 | - | intron | coding_transcript | ||
| 5752575 | 5752628 | 24166 | 24219 | - | intron | coding_transcript | ||
| 5752629 | 5752732 | 24220 | 24323 | - | exon | coding_transcript | ||
| 5752629 | 5752732 | 24220 | 24323 | - | cds | coding_transcript | ||
| 5752629 | 5752732 | 24220 | 24323 | - | exon | coding_transcript | ||
| 5752629 | 5752732 | 24220 | 24323 | - | cds | coding_transcript | ||
| 5752733 | 5752794 | 24324 | 24385 | - | intron | coding_transcript | ||
| 5752733 | 5752794 | 24324 | 24385 | - | intron | coding_transcript | ||
| 5752795 | 5752859 | 24386 | 24450 | - | exon | coding_transcript | ||
| 5752795 | 5752859 | 24386 | 24450 | - | exon | coding_transcript | ||
| 5752795 | 5752859 | 24386 | 24450 | - | cds | coding_transcript | ||
| 5752795 | 5752855 | 24386 | 24446 | - | cds | coding_transcript | ||
| 5752856 | 5752859 | 24447 | 24450 | - | five_prime_utr | coding_transcript | ||
| 5752860 | 5752928 | 24451 | 24519 | - | intron | coding_transcript | ||
| 5752860 | 5752928 | 24451 | 24519 | - | intron | coding_transcript | ||
| 5752929 | 5753097 | 24520 | 24688 | - | exon | coding_transcript | ||
| 5752929 | 5753014 | 24520 | 24605 | - | cds | coding_transcript | ||
| 5752929 | 5752983 | 24520 | 24574 | - | exon | coding_transcript | ||
| 5752929 | 5752983 | 24520 | 24574 | - | five_prime_utr | coding_transcript | ||
| 5752984 | 5762325 | 24575 | 33916 | - | intron | coding_transcript | ||
| 5753015 | 5753097 | 24606 | 24688 | - | five_prime_utr | coding_transcript | ||
| 5753154 | 5754189 | 24745 | 25780 | + | gene | CG1675 | coding_transcript | |
| 5753154 | 5754189 | 24745 | 25780 | + | mrna | FBtr0088375 | coding_transcript | |
| 5753154 | 5754189 | 24745 | 25780 | + | exon | coding_transcript | ||
| 5753154 | 5753208 | 24745 | 24799 | + | five_prime_utr | coding_transcript | ||
| 5753209 | 5754039 | 24800 | 25630 | + | cds | coding_transcript | ||
| 5754040 | 5754189 | 25631 | 25780 | + | three_prime_utr | coding_transcript | ||
| 5757802 | 5757853 | 29393 | 29444 | - | exon | coding_transcript | ||
| 5757802 | 5757853 | 29393 | 29444 | - | five_prime_utr | coding_transcript | ||
| 5758977 | 5761151 | 30568 | 32742 | + | gene | CG18446 | coding_transcript | |
| 5758977 | 5761151 | 30568 | 32742 | + | mrna | FBtr0088376 | coding_transcript | |
| 5758977 | 5760684 | 30568 | 32275 | + | exon | coding_transcript | ||
| 5758977 | 5759254 | 30568 | 30845 | + | five_prime_utr | coding_transcript | ||
| 5759255 | 5760684 | 30846 | 32275 | + | cds | coding_transcript | ||
| 5760685 | 5760746 | 32276 | 32337 | + | intron | coding_transcript | ||
| 5760747 | 5761151 | 32338 | 32742 | + | exon | coding_transcript | ||
| 5760747 | 5760780 | 32338 | 32371 | + | cds | coding_transcript | ||
| 5760781 | 5761151 | 32372 | 32742 | + | three_prime_utr | coding_transcript | ||
| 5762326 | 5762577 | 33917 | 34168 | - | exon | coding_transcript | ||
| 5762326 | 5762577 | 33917 | 34168 | - | five_prime_utr | coding_transcript | ||
| 5762789 | 5763747 | 34380 | 35338 | + | gene | CG12744 | coding_transcript | |
| 5763737 | 5769858 | 35328 | 41449 | - | gene | sec24 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
cbx[22626]::S000169_fly_pretag_fwd
CTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGgaagtgcataccaatcaggacccgc
|
Fasta
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|
cbx[22626]::S000169_fly_pretag_rev
TTGAGACAACGATAGAATATAACTTACAGAATATATGTATATTGGTTTTActtgtcgtcgtcatccttgtagtca
|
Fasta
|