Clone: 6185885656382698 C12
Tagged gene: CG9170
Identifier: FBgn0030716
| Clone | FlyFos023513(pRedFlp-Hgr)(CG9170[19815]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-X | ||||||||
| 15868458 | 15870739 | 16037 | 18318 | + | gene | Or13a | coding_transcript | |
| 15870901 | 15871641 | 18480 | 19220 | + | gene | CG42766 | coding_transcript | |
| 15872136 | 15876974 | 19715 | 25615 | - | gene | CG9170 | coding_transcript | |
| 15872136 | 15876974 | 19715 | 25615 | - | mrna | FBtr0074153 | coding_transcript | |
| 15872136 | 15876974 | 19715 | 25615 | - | mrna | FBtr0074154 | coding_transcript | |
| 15872136 | 15875705 | 19715 | 24346 | - | exon | coding_transcript | ||
| 15872136 | 15875705 | 19715 | 24346 | - | exon | coding_transcript | ||
| 15872136 | 15872233 | 19715 | 19812 | - | three_prime_utr | coding_transcript | ||
| 15872136 | 15872233 | 19715 | 19812 | - | three_prime_utr | coding_transcript | ||
| 15872234 | 15875705 | 19813 | 24346 | - | cds | coding_transcript | ||
| 15872234 | 15875705 | 19813 | 24346 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 19889 | 19922 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 19930 | 20001 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 20002 | 20022 | - | cds | TEV | CLC | |
| 2313 | 2336 | 20023 | 20046 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 20047 | 20088 | - | cds | V5 | CLC | |
| 1548 | 2264 | 20095 | 20811 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 20818 | 20877 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-X | ||||||||
| 15875706 | 15875771 | 24347 | 24412 | - | intron | coding_transcript | ||
| 15875706 | 15875771 | 24347 | 24412 | - | intron | coding_transcript | ||
| 15875772 | 15875883 | 24413 | 24524 | - | exon | coding_transcript | ||
| 15875772 | 15875883 | 24413 | 24524 | - | cds | coding_transcript | ||
| 15875772 | 15875883 | 24413 | 24524 | - | exon | coding_transcript | ||
| 15875772 | 15875883 | 24413 | 24524 | - | cds | coding_transcript | ||
| 15875884 | 15876396 | 24525 | 25037 | - | intron | coding_transcript | ||
| 15875884 | 15876396 | 24525 | 25037 | - | intron | coding_transcript | ||
| 15876397 | 15876974 | 25038 | 25615 | - | exon | coding_transcript | ||
| 15876397 | 15876722 | 25038 | 25363 | - | exon | coding_transcript | ||
| 15876397 | 15876553 | 25038 | 25194 | - | cds | coding_transcript | ||
| 15876397 | 15876553 | 25038 | 25194 | - | cds | coding_transcript | ||
| 15876554 | 15876974 | 25195 | 25615 | - | five_prime_utr | coding_transcript | ||
| 15876554 | 15876722 | 25195 | 25363 | - | five_prime_utr | coding_transcript | ||
| 15876723 | 15876794 | 25364 | 25435 | - | intron | coding_transcript | ||
| 15876795 | 15876974 | 25436 | 25615 | - | exon | coding_transcript | ||
| 15876795 | 15876974 | 25436 | 25615 | - | five_prime_utr | coding_transcript | ||
| 15877807 | 15879438 | 26448 | 28079 | + | gene | CG8931 | coding_transcript | |
| 15879882 | 15880839 | 28523 | 29480 | - | gene | CG9172 | coding_transcript | |
| 15881194 | 15886023 | 29835 | 34664 | - | gene | eIF5 | coding_transcript | |
| 15886520 | 15890040 | 35161 | 38681 | + | gene | exd | coding_transcript | |
| 15891070 | 15893732 | 39711 | 42373 | + | gene | CG8939 | coding_transcript | |
| 15894167 | 15899877 | 42808 | 48518 | - | gene | vap | coding_transcript | |
Sets
Oligos
| Name/Sequence | Export |
|---|---|
|
CG9170[19815]::S000169_fly_pretag_rev
TTAATATTTTTGTAATTAAAATATGCACTACCCCACACATCCTTGATCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG9170[19815]::S000169_fly_pretag_fwd
TTATCAATACTACGACTACTGCTGGAAGCTCGGCGCGCAAGAACGATATCgaagtgcataccaatcaggacccgc
|
Fasta
|