Clone: 06687462840789027 G01
Tagged gene: Rcd6
Identifier: FBgn0034530
| Clone | FlyFos023276(pRedFlp-Hgr)(Rcd6[23577]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 16506008 | 16508586 | 13282 | 15860 | + | gene | CG9945 | coding_transcript | |
| 16508419 | 16510808 | 15693 | 18082 | - | gene | CG11180 | coding_transcript | |
| 16511079 | 16515820 | 18353 | 23094 | + | gene | CG16742 | coding_transcript | |
| 16515691 | 16521007 | 22965 | 29343 | - | gene | Rcd6 | coding_transcript | |
| 16515691 | 16521007 | 22965 | 29343 | - | mrna | FBtr0086253 | coding_transcript | |
| 16515691 | 16521007 | 22965 | 29343 | - | mrna | FBtr0300698 | coding_transcript | |
| 16515691 | 16517437 | 22965 | 25773 | - | exon | coding_transcript | ||
| 16515691 | 16517437 | 22965 | 25773 | - | exon | coding_transcript | ||
| 16515691 | 16516300 | 22965 | 23574 | - | three_prime_utr | coding_transcript | ||
| 16515691 | 16516300 | 22965 | 23574 | - | three_prime_utr | coding_transcript | ||
| 16515698 | 16515820 | 22972 | 23094 | + | three_prime_utr | coding_transcript | ||
| 16516301 | 16517437 | 23575 | 25773 | - | cds | coding_transcript | ||
| 16516301 | 16517437 | 23575 | 25773 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 23651 | 23684 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 23692 | 23763 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 23764 | 23784 | - | cds | TEV | CLC | |
| 2313 | 2336 | 23785 | 23808 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 23809 | 23850 | - | cds | V5 | CLC | |
| 1548 | 2264 | 23857 | 24573 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 24580 | 24639 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 16517438 | 16517530 | 25774 | 25866 | - | intron | coding_transcript | ||
| 16517438 | 16517530 | 25774 | 25866 | - | intron | coding_transcript | ||
| 16517531 | 16517770 | 25867 | 26106 | - | exon | coding_transcript | ||
| 16517531 | 16517770 | 25867 | 26106 | - | cds | coding_transcript | ||
| 16517531 | 16517770 | 25867 | 26106 | - | exon | coding_transcript | ||
| 16517531 | 16517770 | 25867 | 26106 | - | cds | coding_transcript | ||
| 16517771 | 16518188 | 26107 | 26524 | - | intron | coding_transcript | ||
| 16517771 | 16518188 | 26107 | 26524 | - | intron | coding_transcript | ||
| 16518189 | 16518619 | 26525 | 26955 | - | exon | coding_transcript | ||
| 16518189 | 16518619 | 26525 | 26955 | - | exon | coding_transcript | ||
| 16518189 | 16518353 | 26525 | 26689 | - | cds | coding_transcript | ||
| 16518189 | 16518353 | 26525 | 26689 | - | cds | coding_transcript | ||
| 16518354 | 16518619 | 26690 | 26955 | - | five_prime_utr | coding_transcript | ||
| 16518354 | 16518619 | 26690 | 26955 | - | five_prime_utr | coding_transcript | ||
| 16518620 | 16520855 | 26956 | 29191 | - | intron | coding_transcript | ||
| 16518620 | 16520294 | 26956 | 28630 | - | intron | coding_transcript | ||
| 16520295 | 16521007 | 28631 | 29343 | - | exon | coding_transcript | ||
| 16520295 | 16521007 | 28631 | 29343 | - | five_prime_utr | coding_transcript | ||
| 16520856 | 16521007 | 29192 | 29343 | - | exon | coding_transcript | ||
| 16520856 | 16521007 | 29192 | 29343 | - | five_prime_utr | coding_transcript | ||
| 16521381 | 16528191 | 29717 | 36527 | - | gene | rig | coding_transcript | |
| 16523897 | 16525928 | 32233 | 34264 | + | gene | CG13436 | coding_transcript | |
| 16528476 | 16529173 | 36812 | 37509 | + | gene | maf-S | coding_transcript | |
| 16529255 | 16530063 | 37591 | 38399 | + | gene | CG11110 | coding_transcript | |
| 16529971 | 16531310 | 38307 | 39646 | - | gene | CG33785 | coding_transcript | |
| 16529971 | 16531310 | 38307 | 39646 | - | gene | CG33786 | coding_transcript | |
| 16531537 | 16533370 | 39873 | 41706 | + | gene | DMAP1 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Rcd6[23577]::S000169_fly_pretag_rev
GACTGATGATCGATTGGGATCCGGTTTCCAGAACCAAAAAAACGGACTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
Rcd6[23577]::S000169_fly_pretag_fwd
CGCTGGGCAACGAGTCCGACGATTACCGGAAGTACCGCGATGTGGCTCTTgaagtgcataccaatcaggacccgc
|
Fasta
|