Clone: 8580792172035406 B06

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Export Fasta GenBank GFF

Validation(click to hide details)

Type	Status	Download / View
Grows in selection	good
NGS-based tag validation	bad

Genes in pFlyFos vector(click to hide details)

Gene		Clone relative			Genome relative
Name	Length	Start	End	Strand	Start	End	Strand
DsRed	716	8417	9132	+	8417	9132	+

Features(click to show details)

Start (Source)	End (Source)	Start	End	Strand	Type	Name	Source
pFlyFos
1	107	1	107	-	cds	LacZ	epicentre
4	21	4	21	-	primer_bind	CC2_rev	epicentre
310	593	310	593	+	misc_recomb	attB	epicentre
727	1386	727	1386	-	cds	Cat	epicentre
1605	1952	1605	1952	+	cds	redF	epicentre
2336	2953	2336	2953	+	rep_origin	oriV	epicentre
2953	3007	2953	3007	+	rep_origin	ori2	epicentre
3347	4102	3347	4102	+	cds	repE	epicentre
4681	5856	4681	5856	+	cds	parA	epicentre
5856	6827	5856	6827	+	cds	parB	epicentre
6900	7417	6900	7417	+	repeat_region	parC	epicentre
7633	8031	7633	8031	+	misc_binding	cos	epicentre
8049	8082	8049	8082	+	misc_recomb	loxP	epicentre
8182	8416	8182	8416	+	promoter	3xP3	epicentre
8417	9132	8417	9132	+	gene	DsRed	epicentre
8452	9132	8452	9132	+	cds	DsRed	epicentre
9284	9334	9284	9334	+	terminator	SV40	epicentre
9408	9630	9408	9630	-	cds	LacZ	epicentre
9559	9576	9559	9576	+	primer_bind	T7	epicentre
9610	9627	9610	9627	+	primer_bind	CC2_fwd	epicentre
dmel-5.43-3R
6675545	6677510	13885	15850	+	gene	CG42394	coding_transcript
6676815	6680144	15155	18484	-	gene	CG6567	coding_transcript
6678446	6679366	16786	17706	+	gene	CG4565	coding_transcript
6680221	6682134	18561	20474	+	gene	CG4511	coding_transcript
6682513	6683796	20853	22136	+	gene	CG4570	coding_transcript
6683636	6685535	21976	23875	-	gene	CG14694	coding_transcript
6686253	6688710	24593	27050	-	gene	CG6574	coding_transcript
6689077	6694379	27417	32719	-	gene	SelR	coding_transcript
6694442	6696277	32782	34617	+	gene	Tsp86D	coding_transcript
6696628	6698102	34968	36442	-	gene	Fdh	coding_transcript
6698728	6701304	37068	39644	+	gene	CG4596	coding_transcript
6702106	6703979	40446	43381	+	gene	Sodh-2	coding_transcript
6702106	6703979	40446	43381	+	mrna	FBtr0082324	coding_transcript
6702106	6702230	40446	40570	+	exon		coding_transcript
6702106	6702176	40446	40516	+	five_prime_utr		coding_transcript
6702177	6702230	40517	40570	+	cds		coding_transcript
6702231	6702281	40571	40621	+	intron		coding_transcript
6702282	6702315	40622	40655	+	exon		coding_transcript
6702282	6702315	40622	40655	+	cds		coding_transcript
6702316	6702621	40656	40961	+	intron		coding_transcript
6702622	6703091	40962	41431	+	exon		coding_transcript
6702622	6703091	40962	41431	+	cds		coding_transcript
6703092	6703150	41432	41490	+	intron		coding_transcript
6703151	6703369	41491	41709	+	exon		coding_transcript
6703151	6703369	41491	41709	+	cds		coding_transcript
6703370	6703423	41710	41763	+	intron		coding_transcript
6703424	6703545	41764	41885	+	exon		coding_transcript
6703424	6703545	41764	41885	+	cds		coding_transcript
6703546	6703603	41886	41943	+	intron		coding_transcript
6703604	6703979	41944	43381	+	exon		coding_transcript
6703604	6703787	41944	43189	+	cds		coding_transcript
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG
1482	1541	42125	42184	+	cds	2xTY1	CLC
1548	2264	42191	42907	+	cds	SGFP	CLC
2271	2312	42914	42955	+	cds	V5	CLC
2313	2336	42956	42979	+	cds	Precision cut site	CLC
2337	2357	42980	43000	+	cds	TEV	CLC
2358	2429	43001	43072	+	cds	BLRP	CLC
3813	3846	43080	43113	+	misc_recomb	FRT	CLC
dmel-5.43-3R
6703788	6703979	43190	43381	+	three_prime_utr		coding_transcript
6703926	6705041	43328	44443	-	gene	CG14695	coding_transcript

Sets(click to hide details)

Oligos(click to hide details)

Name/Sequence	Export
Sodh-2[42124]::S000169_fly_pretag_rev AGGCTCCAAAAATAAGAACTATTCGGTTTATAGATAAGAGTGTGTATTCActtgtcgtcgtcatccttgtagtca	Fasta
Sodh-2[42124]::S000169_fly_pretag_fwd AGGTCATGATCCACGTCCAGCCGAGGGACGCGAACAACAAAGTCAAGTTCgaagtgcataccaatcaggacccgc	Fasta