Clone: 1213189838248655 C08
Tagged gene: Trc8
Identifier: FBgn0039668
| Clone | FlyFos019749(pRedFlp-Hgr)(Trc8[21019]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 25315193 | 25317105 | 10846 | 12758 | + | gene | CG2006 | coding_transcript | |
| 25316266 | 25316842 | 11919 | 12495 | - | gene | Spase12 | coding_transcript | |
| 25317246 | 25319235 | 12899 | 14888 | - | gene | CG2310 | coding_transcript | |
| 25319574 | 25319987 | 15227 | 15640 | + | gene | CG11501 | coding_transcript | |
| 25320524 | 25324649 | 16177 | 20302 | + | gene | CG2010 | coding_transcript | |
| 25324562 | 25329519 | 20215 | 26234 | - | gene | Trc8 | coding_transcript | |
| 25324562 | 25329519 | 20215 | 26234 | - | mrna | FBtr0085430 | coding_transcript | |
| 25324562 | 25329519 | 20215 | 26234 | - | mrna | FBtr0085432 | coding_transcript | |
| 25324562 | 25325714 | 20215 | 22429 | - | exon | coding_transcript | ||
| 25324562 | 25325714 | 20215 | 22429 | - | exon | coding_transcript | ||
| 25324562 | 25325363 | 20215 | 21016 | - | three_prime_utr | coding_transcript | ||
| 25324562 | 25325363 | 20215 | 21016 | - | three_prime_utr | coding_transcript | ||
| 25324841 | 25329519 | 20494 | 26234 | - | mrna | FBtr0085429 | coding_transcript | |
| 25324841 | 25327322 | 20494 | 24037 | - | mrna | FBtr0085431 | coding_transcript | |
| 25324841 | 25325037 | 20494 | 20690 | - | exon | coding_transcript | ||
| 25324841 | 25325037 | 20494 | 20690 | - | three_prime_utr | coding_transcript | ||
| 25324841 | 25325037 | 20494 | 20690 | - | exon | coding_transcript | ||
| 25324841 | 25325037 | 20494 | 20690 | - | three_prime_utr | coding_transcript | ||
| 25325038 | 25325093 | 20691 | 20746 | - | intron | coding_transcript | ||
| 25325038 | 25325093 | 20691 | 20746 | - | intron | coding_transcript | ||
| 25325094 | 25325714 | 20747 | 22429 | - | exon | coding_transcript | ||
| 25325094 | 25325714 | 20747 | 22429 | - | exon | coding_transcript | ||
| 25325094 | 25325363 | 20747 | 21016 | - | three_prime_utr | coding_transcript | ||
| 25325094 | 25325363 | 20747 | 21016 | - | three_prime_utr | coding_transcript | ||
| 25325364 | 25325714 | 21017 | 22429 | - | cds | coding_transcript | ||
| 25325364 | 25325714 | 21017 | 22429 | - | cds | coding_transcript | ||
| 25325364 | 25325714 | 21017 | 22429 | - | cds | coding_transcript | ||
| 25325364 | 25325714 | 21017 | 22429 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 21093 | 21126 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 21134 | 21205 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 21206 | 21226 | - | cds | TEV | CLC | |
| 2313 | 2336 | 21227 | 21250 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 21251 | 21292 | - | cds | V5 | CLC | |
| 1548 | 2264 | 21299 | 22015 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 22022 | 22081 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 25325715 | 25325779 | 22430 | 22494 | - | intron | coding_transcript | ||
| 25325715 | 25325779 | 22430 | 22494 | - | intron | coding_transcript | ||
| 25325715 | 25325779 | 22430 | 22494 | - | intron | coding_transcript | ||
| 25325715 | 25325779 | 22430 | 22494 | - | intron | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | exon | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | cds | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | exon | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | cds | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | exon | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | cds | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | exon | coding_transcript | ||
| 25325780 | 25325980 | 22495 | 22695 | - | cds | coding_transcript | ||
| 25325981 | 25326038 | 22696 | 22753 | - | intron | coding_transcript | ||
| 25325981 | 25326038 | 22696 | 22753 | - | intron | coding_transcript | ||
| 25325981 | 25326038 | 22696 | 22753 | - | intron | coding_transcript | ||
| 25325981 | 25326038 | 22696 | 22753 | - | intron | coding_transcript | ||
| 25326039 | 25326235 | 22754 | 22950 | - | exon | coding_transcript | ||
| 25326039 | 25326235 | 22754 | 22950 | - | cds | coding_transcript | ||
| 25326039 | 25326220 | 22754 | 22935 | - | exon | coding_transcript | ||
| 25326039 | 25326220 | 22754 | 22935 | - | cds | coding_transcript | ||
| 25326039 | 25326220 | 22754 | 22935 | - | exon | coding_transcript | ||
| 25326039 | 25326220 | 22754 | 22935 | - | cds | coding_transcript | ||
| 25326039 | 25326220 | 22754 | 22935 | - | exon | coding_transcript | ||
| 25326039 | 25326220 | 22754 | 22935 | - | cds | coding_transcript | ||
| 25326221 | 25326440 | 22936 | 23155 | - | intron | coding_transcript | ||
| 25326221 | 25326440 | 22936 | 23155 | - | intron | coding_transcript | ||
| 25326221 | 25326440 | 22936 | 23155 | - | intron | coding_transcript | ||
| 25326236 | 25326440 | 22951 | 23155 | - | intron | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | exon | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | cds | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | exon | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | cds | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | exon | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | cds | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | exon | coding_transcript | ||
| 25326441 | 25326615 | 23156 | 23330 | - | cds | coding_transcript | ||
| 25326616 | 25326672 | 23331 | 23387 | - | intron | coding_transcript | ||
| 25326616 | 25326672 | 23331 | 23387 | - | intron | coding_transcript | ||
| 25326616 | 25326672 | 23331 | 23387 | - | intron | coding_transcript | ||
| 25326616 | 25326672 | 23331 | 23387 | - | intron | coding_transcript | ||
| 25326673 | 25327322 | 23388 | 24037 | - | exon | coding_transcript | ||
| 25326673 | 25327210 | 23388 | 23925 | - | exon | coding_transcript | ||
| 25326673 | 25327210 | 23388 | 23925 | - | cds | coding_transcript | ||
| 25326673 | 25327210 | 23388 | 23925 | - | exon | coding_transcript | ||
| 25326673 | 25327210 | 23388 | 23925 | - | cds | coding_transcript | ||
| 25326673 | 25327210 | 23388 | 23925 | - | exon | coding_transcript | ||
| 25326673 | 25327210 | 23388 | 23925 | - | cds | coding_transcript | ||
| 25326673 | 25327152 | 23388 | 23867 | - | cds | coding_transcript | ||
| 25327153 | 25327322 | 23868 | 24037 | - | five_prime_utr | coding_transcript | ||
| 25327211 | 25327424 | 23926 | 24139 | - | intron | coding_transcript | ||
| 25327211 | 25327424 | 23926 | 24139 | - | intron | coding_transcript | ||
| 25327211 | 25327424 | 23926 | 24139 | - | intron | coding_transcript | ||
| 25327425 | 25327995 | 24140 | 24710 | - | exon | coding_transcript | ||
| 25327425 | 25327995 | 24140 | 24710 | - | cds | coding_transcript | ||
| 25327425 | 25327995 | 24140 | 24710 | - | exon | coding_transcript | ||
| 25327425 | 25327995 | 24140 | 24710 | - | cds | coding_transcript | ||
| 25327425 | 25327995 | 24140 | 24710 | - | exon | coding_transcript | ||
| 25327425 | 25327995 | 24140 | 24710 | - | cds | coding_transcript | ||
| 25327996 | 25328450 | 24711 | 25165 | - | intron | coding_transcript | ||
| 25327996 | 25328450 | 24711 | 25165 | - | intron | coding_transcript | ||
| 25327996 | 25328450 | 24711 | 25165 | - | intron | coding_transcript | ||
| 25328451 | 25329519 | 25166 | 26234 | - | exon | coding_transcript | ||
| 25328451 | 25329519 | 25166 | 26234 | - | exon | coding_transcript | ||
| 25328451 | 25329519 | 25166 | 26234 | - | exon | coding_transcript | ||
| 25328451 | 25328847 | 25166 | 25562 | - | cds | coding_transcript | ||
| 25328451 | 25328847 | 25166 | 25562 | - | cds | coding_transcript | ||
| 25328451 | 25328847 | 25166 | 25562 | - | cds | coding_transcript | ||
| 25328848 | 25329519 | 25563 | 26234 | - | five_prime_utr | coding_transcript | ||
| 25328848 | 25329519 | 25563 | 26234 | - | five_prime_utr | coding_transcript | ||
| 25328848 | 25329519 | 25563 | 26234 | - | five_prime_utr | coding_transcript | ||
| 25341535 | 25342249 | 38250 | 38964 | + | gene | CG2014 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
Trc8[21019]::S000169_fly_pretag_rev
AGCGCTCCCGTTCCGTTCGATTCGGTCCTAGCCTACCCTATATGCGACTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
Trc8[21019]::S000169_fly_pretag_fwd
CGGCGGCCAGCAATACGACGCACATGTTCCGGATGTCGCAGGACCAGCAGgaagtgcataccaatcaggacccgc
|
Fasta
|