Clone: 1213189838248655 C01
Tagged gene: CG4393
Identifier: FBgn0039075
| Clone | FlyFos019643(pRedFlp-Hgr)(CG4393[17957]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 19198646 | 19199322 | 13290 | 13966 | + | gene | CG42827 | coding_transcript | |
| 19199425 | 19199967 | 14069 | 14611 | + | gene | CG42828 | coding_transcript | |
| 19202933 | 19210499 | 17577 | 26205 | - | gene | CG4393 | coding_transcript | |
| 19202933 | 19210499 | 17577 | 26205 | - | mrna | FBtr0301085 | coding_transcript | |
| 19202933 | 19203454 | 17577 | 19160 | - | exon | coding_transcript | ||
| 19202933 | 19203310 | 17577 | 17954 | - | three_prime_utr | coding_transcript | ||
| 19203311 | 19203454 | 17955 | 19160 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 18031 | 18064 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 18072 | 18143 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 18144 | 18164 | - | cds | TEV | CLC | |
| 2313 | 2336 | 18165 | 18188 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 18189 | 18230 | - | cds | V5 | CLC | |
| 1548 | 2264 | 18237 | 18953 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 18960 | 19019 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 19203455 | 19203516 | 19161 | 19222 | - | intron | coding_transcript | ||
| 19203517 | 19203648 | 19223 | 19354 | - | exon | coding_transcript | ||
| 19203517 | 19203648 | 19223 | 19354 | - | cds | coding_transcript | ||
| 19203649 | 19203710 | 19355 | 19416 | - | intron | coding_transcript | ||
| 19203711 | 19203872 | 19417 | 19578 | - | exon | coding_transcript | ||
| 19203711 | 19203872 | 19417 | 19578 | - | cds | coding_transcript | ||
| 19203873 | 19203992 | 19579 | 19698 | - | intron | coding_transcript | ||
| 19203993 | 19204155 | 19699 | 19861 | - | exon | coding_transcript | ||
| 19203993 | 19204155 | 19699 | 19861 | - | cds | coding_transcript | ||
| 19204156 | 19204224 | 19862 | 19930 | - | intron | coding_transcript | ||
| 19204225 | 19204515 | 19931 | 20221 | - | exon | coding_transcript | ||
| 19204225 | 19204515 | 19931 | 20221 | - | cds | coding_transcript | ||
| 19204516 | 19204584 | 20222 | 20290 | - | intron | coding_transcript | ||
| 19204585 | 19204796 | 20291 | 20502 | - | exon | coding_transcript | ||
| 19204585 | 19204796 | 20291 | 20502 | - | cds | coding_transcript | ||
| 19204797 | 19204862 | 20503 | 20568 | - | intron | coding_transcript | ||
| 19204863 | 19205868 | 20569 | 21574 | - | exon | coding_transcript | ||
| 19204863 | 19205868 | 20569 | 21574 | - | cds | coding_transcript | ||
| 19205869 | 19205980 | 21575 | 21686 | - | intron | coding_transcript | ||
| 19205981 | 19206203 | 21687 | 21909 | - | exon | coding_transcript | ||
| 19205981 | 19206203 | 21687 | 21909 | - | cds | coding_transcript | ||
| 19206204 | 19206257 | 21910 | 21963 | - | intron | coding_transcript | ||
| 19206258 | 19206703 | 21964 | 22409 | - | exon | coding_transcript | ||
| 19206258 | 19206703 | 21964 | 22409 | - | cds | coding_transcript | ||
| 19206704 | 19206763 | 22410 | 22469 | - | intron | coding_transcript | ||
| 19206764 | 19207082 | 22470 | 22788 | - | exon | coding_transcript | ||
| 19206764 | 19207082 | 22470 | 22788 | - | cds | coding_transcript | ||
| 19207083 | 19207375 | 22789 | 23081 | - | intron | coding_transcript | ||
| 19207376 | 19208269 | 23082 | 23975 | - | exon | coding_transcript | ||
| 19207376 | 19208255 | 23082 | 23961 | - | cds | coding_transcript | ||
| 19208256 | 19208269 | 23962 | 23975 | - | five_prime_utr | coding_transcript | ||
| 19208270 | 19210221 | 23976 | 25927 | - | intron | coding_transcript | ||
| 19210222 | 19210499 | 25928 | 26205 | - | exon | coding_transcript | ||
| 19210222 | 19210499 | 25928 | 26205 | - | five_prime_utr | coding_transcript | ||
| 19214095 | 19214620 | 29801 | 30326 | - | gene | CG31515 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG4393[17957]::S000169_fly_pretag_rev
GCCGATGGTGTCGGCGATGGTTGCTTTCCTGTGGCCAGGTCCTGGCTCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG4393[17957]::S000169_fly_pretag_fwd
AACTGCTGCTGGACAATGGAATGCTGCAGGGCGAGTATTGTGGCGGGAAAgaagtgcataccaatcaggacccgc
|
Fasta
|