Clone: 8882336809946705 F05
Tagged gene: CG13101
Identifier: FBgn0032084
| Clone | FlyFos017080(pRedFlp-Hgr)(CG13101[16025]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2L | ||||||||
| 8977882 | 8984870 | 15863 | 23913 | - | gene | CG13101 | coding_transcript | |
| 8977882 | 8984870 | 15863 | 23913 | - | mrna | FBtr0079783 | coding_transcript | |
| 8977882 | 8984870 | 15863 | 23913 | - | mrna | FBtr0079784 | coding_transcript | |
| 8977882 | 8978357 | 15863 | 17400 | - | exon | coding_transcript | ||
| 8977882 | 8978357 | 15863 | 17400 | - | exon | coding_transcript | ||
| 8977882 | 8978041 | 15863 | 16022 | - | three_prime_utr | coding_transcript | ||
| 8977882 | 8978041 | 15863 | 16022 | - | three_prime_utr | coding_transcript | ||
| 8978042 | 8978357 | 16023 | 17400 | - | cds | coding_transcript | ||
| 8978042 | 8978357 | 16023 | 17400 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 16099 | 16132 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 16140 | 16211 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 16212 | 16232 | - | cds | TEV | CLC | |
| 2313 | 2336 | 16233 | 16256 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 16257 | 16298 | - | cds | V5 | CLC | |
| 1548 | 2264 | 16305 | 17021 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 17028 | 17087 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2L | ||||||||
| 8978358 | 8978420 | 17401 | 17463 | - | intron | coding_transcript | ||
| 8978358 | 8978420 | 17401 | 17463 | - | intron | coding_transcript | ||
| 8978421 | 8978604 | 17464 | 17647 | - | exon | coding_transcript | ||
| 8978421 | 8978604 | 17464 | 17647 | - | cds | coding_transcript | ||
| 8978421 | 8978604 | 17464 | 17647 | - | exon | coding_transcript | ||
| 8978421 | 8978604 | 17464 | 17647 | - | cds | coding_transcript | ||
| 8978605 | 8978666 | 17648 | 17709 | - | intron | coding_transcript | ||
| 8978605 | 8978666 | 17648 | 17709 | - | intron | coding_transcript | ||
| 8978667 | 8978786 | 17710 | 17829 | - | exon | coding_transcript | ||
| 8978667 | 8978786 | 17710 | 17829 | - | cds | coding_transcript | ||
| 8978667 | 8978786 | 17710 | 17829 | - | exon | coding_transcript | ||
| 8978667 | 8978786 | 17710 | 17829 | - | cds | coding_transcript | ||
| 8978787 | 8978857 | 17830 | 17900 | - | intron | coding_transcript | ||
| 8978787 | 8978857 | 17830 | 17900 | - | intron | coding_transcript | ||
| 8978858 | 8979083 | 17901 | 18126 | - | exon | coding_transcript | ||
| 8978858 | 8979083 | 17901 | 18126 | - | cds | coding_transcript | ||
| 8978858 | 8979083 | 17901 | 18126 | - | exon | coding_transcript | ||
| 8978858 | 8979083 | 17901 | 18126 | - | cds | coding_transcript | ||
| 8979084 | 8980047 | 18127 | 19090 | - | intron | coding_transcript | ||
| 8979084 | 8980047 | 18127 | 19090 | - | intron | coding_transcript | ||
| 8980048 | 8980302 | 19091 | 19345 | - | exon | coding_transcript | ||
| 8980048 | 8980302 | 19091 | 19345 | - | exon | coding_transcript | ||
| 8980048 | 8980158 | 19091 | 19201 | - | cds | coding_transcript | ||
| 8980048 | 8980158 | 19091 | 19201 | - | cds | coding_transcript | ||
| 8980159 | 8980302 | 19202 | 19345 | - | five_prime_utr | coding_transcript | ||
| 8980159 | 8980302 | 19202 | 19345 | - | five_prime_utr | coding_transcript | ||
| 8980303 | 8983889 | 19346 | 22932 | - | intron | coding_transcript | ||
| 8980303 | 8983889 | 19346 | 22932 | - | intron | coding_transcript | ||
| 8980680 | 8981437 | 19723 | 20480 | + | gene | CG18662 | coding_transcript | |
| 8980680 | 8981437 | 19723 | 20480 | + | mrna | FBtr0079760 | coding_transcript | |
| 8980680 | 8980783 | 19723 | 19826 | + | exon | coding_transcript | ||
| 8980680 | 8980731 | 19723 | 19774 | + | five_prime_utr | coding_transcript | ||
| 8980732 | 8980783 | 19775 | 19826 | + | cds | coding_transcript | ||
| 8980784 | 8980854 | 19827 | 19897 | + | intron | coding_transcript | ||
| 8980855 | 8981019 | 19898 | 20062 | + | exon | coding_transcript | ||
| 8980855 | 8981019 | 19898 | 20062 | + | cds | coding_transcript | ||
| 8981020 | 8981076 | 20063 | 20119 | + | intron | coding_transcript | ||
| 8981077 | 8981437 | 20120 | 20480 | + | exon | coding_transcript | ||
| 8981077 | 8981300 | 20120 | 20343 | + | cds | coding_transcript | ||
| 8981301 | 8981437 | 20344 | 20480 | + | three_prime_utr | coding_transcript | ||
| 8983890 | 8984032 | 22933 | 23075 | - | exon | coding_transcript | ||
| 8983890 | 8984032 | 22933 | 23075 | - | five_prime_utr | coding_transcript | ||
| 8983890 | 8984032 | 22933 | 23075 | - | exon | coding_transcript | ||
| 8983890 | 8984032 | 22933 | 23075 | - | five_prime_utr | coding_transcript | ||
| 8984033 | 8984800 | 23076 | 23843 | - | intron | coding_transcript | ||
| 8984033 | 8984735 | 23076 | 23778 | - | intron | coding_transcript | ||
| 8984736 | 8984870 | 23779 | 23913 | - | exon | coding_transcript | ||
| 8984736 | 8984870 | 23779 | 23913 | - | five_prime_utr | coding_transcript | ||
| 8984801 | 8984870 | 23844 | 23913 | - | exon | coding_transcript | ||
| 8984801 | 8984870 | 23844 | 23913 | - | five_prime_utr | coding_transcript | ||
| 8985932 | 8989287 | 24975 | 28330 | - | gene | rost | coding_transcript | |
| 8991989 | 8993632 | 31032 | 32675 | + | gene | CG9555 | coding_transcript | |
| 8994463 | 8995546 | 33506 | 34589 | + | gene | CG17906 | coding_transcript | |
| 8994669 | 8997375 | 33712 | 36418 | - | gene | alien | coding_transcript | |
| 8997641 | 8998544 | 36684 | 37587 | + | gene | CG18661 | coding_transcript | |
| 8998537 | 8999468 | 37580 | 38511 | + | gene | Try29F | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG13101[16025]::S000169_fly_pretag_rev
ACTACCGACTAAATTGTGCACTTCAACGATTAGCCTTTATTCGACAGTTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG13101[16025]::S000169_fly_pretag_fwd
TATTGGGCAATTTCGCTGGCTATGAGAATCAGGCTTATTTGCCCACTGGCgaagtgcataccaatcaggacccgc
|
Fasta
|