Clone: 05512796956240418 B03
Tagged gene: CG6236
Identifier: FBgn0038318
| Clone | FlyFos016834(pRedFlp-Hgr)(CG6236[25490]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | good | [view] |
Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 11135915 | 11140920 | 10142 | 15147 | + | gene | Tm2 | coding_transcript | |
| 11142195 | 11144012 | 16422 | 18239 | + | gene | CG14866 | coding_transcript | |
| 11143924 | 11145768 | 18151 | 19995 | - | gene | CG6276 | coding_transcript | |
| 11146484 | 11150197 | 20711 | 24424 | + | gene | ear | coding_transcript | |
| 11151039 | 11154000 | 25266 | 29289 | - | gene | CG6236 | coding_transcript | |
| 11151039 | 11154000 | 25266 | 29289 | - | mrna | FBtr0083121 | coding_transcript | |
| 11151039 | 11154000 | 25266 | 29289 | - | mrna | FBtr0083122 | coding_transcript | |
| 11151039 | 11151575 | 25266 | 26864 | - | exon | coding_transcript | ||
| 11151039 | 11151575 | 25266 | 26864 | - | exon | coding_transcript | ||
| 11151039 | 11151260 | 25266 | 25487 | - | three_prime_utr | coding_transcript | ||
| 11151039 | 11151260 | 25266 | 25487 | - | three_prime_utr | coding_transcript | ||
| 11151261 | 11151575 | 25488 | 26864 | - | cds | coding_transcript | ||
| 11151261 | 11151575 | 25488 | 26864 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 25564 | 25597 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 25605 | 25676 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 25677 | 25697 | - | cds | TEV | CLC | |
| 2313 | 2336 | 25698 | 25721 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 25722 | 25763 | - | cds | V5 | CLC | |
| 1548 | 2264 | 25770 | 26486 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 26493 | 26552 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 11151576 | 11151652 | 26865 | 26941 | - | intron | coding_transcript | ||
| 11151576 | 11151652 | 26865 | 26941 | - | intron | coding_transcript | ||
| 11151653 | 11151957 | 26942 | 27246 | - | exon | coding_transcript | ||
| 11151653 | 11151957 | 26942 | 27246 | - | cds | coding_transcript | ||
| 11151653 | 11151957 | 26942 | 27246 | - | exon | coding_transcript | ||
| 11151653 | 11151957 | 26942 | 27246 | - | cds | coding_transcript | ||
| 11151958 | 11152013 | 27247 | 27302 | - | intron | coding_transcript | ||
| 11151958 | 11152013 | 27247 | 27302 | - | intron | coding_transcript | ||
| 11152014 | 11152374 | 27303 | 27663 | - | exon | coding_transcript | ||
| 11152014 | 11152374 | 27303 | 27663 | - | cds | coding_transcript | ||
| 11152014 | 11152374 | 27303 | 27663 | - | exon | coding_transcript | ||
| 11152014 | 11152374 | 27303 | 27663 | - | cds | coding_transcript | ||
| 11152375 | 11152431 | 27664 | 27720 | - | intron | coding_transcript | ||
| 11152375 | 11152431 | 27664 | 27720 | - | intron | coding_transcript | ||
| 11152432 | 11153035 | 27721 | 28324 | - | exon | coding_transcript | ||
| 11152432 | 11153035 | 27721 | 28324 | - | cds | coding_transcript | ||
| 11152432 | 11153035 | 27721 | 28324 | - | exon | coding_transcript | ||
| 11152432 | 11153035 | 27721 | 28324 | - | cds | coding_transcript | ||
| 11153036 | 11153097 | 28325 | 28386 | - | intron | coding_transcript | ||
| 11153036 | 11153097 | 28325 | 28386 | - | intron | coding_transcript | ||
| 11153098 | 11153285 | 28387 | 28574 | - | exon | coding_transcript | ||
| 11153098 | 11153285 | 28387 | 28574 | - | cds | coding_transcript | ||
| 11153098 | 11153285 | 28387 | 28574 | - | exon | coding_transcript | ||
| 11153098 | 11153285 | 28387 | 28574 | - | cds | coding_transcript | ||
| 11153286 | 11153351 | 28575 | 28640 | - | intron | coding_transcript | ||
| 11153286 | 11153351 | 28575 | 28640 | - | intron | coding_transcript | ||
| 11153352 | 11153502 | 28641 | 28791 | - | exon | coding_transcript | ||
| 11153352 | 11153502 | 28641 | 28791 | - | cds | coding_transcript | ||
| 11153352 | 11153502 | 28641 | 28791 | - | exon | coding_transcript | ||
| 11153352 | 11153502 | 28641 | 28791 | - | cds | coding_transcript | ||
| 11153503 | 11153648 | 28792 | 28937 | - | intron | coding_transcript | ||
| 11153503 | 11153648 | 28792 | 28937 | - | intron | coding_transcript | ||
| 11153649 | 11153784 | 28938 | 29073 | - | exon | coding_transcript | ||
| 11153649 | 11153784 | 28938 | 29073 | - | exon | coding_transcript | ||
| 11153649 | 11153767 | 28938 | 29056 | - | cds | coding_transcript | ||
| 11153649 | 11153767 | 28938 | 29056 | - | cds | coding_transcript | ||
| 11153768 | 11153784 | 29057 | 29073 | - | five_prime_utr | coding_transcript | ||
| 11153768 | 11153784 | 29057 | 29073 | - | five_prime_utr | coding_transcript | ||
| 11153785 | 11153876 | 29074 | 29165 | - | intron | coding_transcript | ||
| 11153785 | 11153849 | 29074 | 29138 | - | intron | coding_transcript | ||
| 11153850 | 11154000 | 29139 | 29289 | - | exon | coding_transcript | ||
| 11153850 | 11154000 | 29139 | 29289 | - | five_prime_utr | coding_transcript | ||
| 11153877 | 11154000 | 29166 | 29289 | - | exon | coding_transcript | ||
| 11153877 | 11154000 | 29166 | 29289 | - | five_prime_utr | coding_transcript | ||
| 11154452 | 11156135 | 29741 | 31424 | + | gene | ea | coding_transcript | |
| 11156462 | 11157314 | 31751 | 32603 | + | gene | mRpL9 | coding_transcript | |
| 11157306 | 11158864 | 32595 | 34153 | - | gene | FK506-bp1 | coding_transcript | |
| 11159001 | 11164103 | 34290 | 39392 | + | gene | Sra-1 | coding_transcript | |
| 11163630 | 11168978 | 38919 | 44267 | - | gene | CG6218 | coding_transcript | |
| 11166407 | 11167939 | 41696 | 43228 | + | gene | Aats-ser | coding_transcript | |
| 11169375 | 11171905 | 44664 | 47194 | - | gene | Surf4 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
CG6236[25490]::S000169_fly_pretag_fwd
GCATATACGACCGGGATCCGGAGCTGCGGAAGTACTGCTACTGTCGCGATgaagtgcataccaatcaggacccgc
|
Fasta
|
|
CG6236[25490]::S000169_fly_pretag_rev
ATTGCTTAGCAGTTTCTATGTTTTGGACTTGTCATTTTGTGCACAAATCActtgtcgtcgtcatccttgtagtca
|
Fasta
|