Clone: 3207692103829951 C11
Tagged gene: CG6051
Identifier: FBgn0039492
| Clone | FlyFos016786(pRedFlp-Hgr)(CG6051[16613]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 22947340 | 22950410 | 12586 | 15656 | - | gene | CG6059 | coding_transcript | |
| 22950481 | 22976791 | 15727 | 43099 | - | gene | CG6051 | coding_transcript | |
| 22950481 | 22976791 | 15727 | 43099 | - | mrna | FBtr0305050 | coding_transcript | |
| 22950481 | 22952343 | 15727 | 18651 | - | exon | coding_transcript | ||
| 22950481 | 22951364 | 15727 | 16610 | - | three_prime_utr | coding_transcript | ||
| 22951160 | 22976791 | 16406 | 43099 | - | mrna | FBtr0113297 | coding_transcript | |
| 22951160 | 22952343 | 16406 | 18651 | - | exon | coding_transcript | ||
| 22951160 | 22951364 | 16406 | 16610 | - | three_prime_utr | coding_transcript | ||
| 22951365 | 22952343 | 16611 | 18651 | - | cds | coding_transcript | ||
| 22951365 | 22952343 | 16611 | 18651 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 16687 | 16720 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 16728 | 16799 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 16800 | 16820 | - | cds | TEV | CLC | |
| 2313 | 2336 | 16821 | 16844 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 16845 | 16886 | - | cds | V5 | CLC | |
| 1548 | 2264 | 16893 | 17609 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 17616 | 17675 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 22952344 | 22952415 | 18652 | 18723 | - | intron | coding_transcript | ||
| 22952344 | 22952415 | 18652 | 18723 | - | intron | coding_transcript | ||
| 22952416 | 22953488 | 18724 | 19796 | - | exon | coding_transcript | ||
| 22952416 | 22953488 | 18724 | 19796 | - | cds | coding_transcript | ||
| 22952416 | 22953488 | 18724 | 19796 | - | exon | coding_transcript | ||
| 22952416 | 22953488 | 18724 | 19796 | - | cds | coding_transcript | ||
| 22953489 | 22953558 | 19797 | 19866 | - | intron | coding_transcript | ||
| 22953489 | 22953558 | 19797 | 19866 | - | intron | coding_transcript | ||
| 22953559 | 22954299 | 19867 | 20607 | - | exon | coding_transcript | ||
| 22953559 | 22954299 | 19867 | 20607 | - | cds | coding_transcript | ||
| 22953559 | 22954299 | 19867 | 20607 | - | exon | coding_transcript | ||
| 22953559 | 22954299 | 19867 | 20607 | - | cds | coding_transcript | ||
| 22954300 | 22954360 | 20608 | 20668 | - | intron | coding_transcript | ||
| 22954300 | 22954360 | 20608 | 20668 | - | intron | coding_transcript | ||
| 22954361 | 22954501 | 20669 | 20809 | - | exon | coding_transcript | ||
| 22954361 | 22954501 | 20669 | 20809 | - | cds | coding_transcript | ||
| 22954361 | 22954501 | 20669 | 20809 | - | exon | coding_transcript | ||
| 22954361 | 22954501 | 20669 | 20809 | - | cds | coding_transcript | ||
| 22954502 | 22976115 | 20810 | 42423 | - | intron | coding_transcript | ||
| 22954502 | 22976115 | 20810 | 42423 | - | intron | coding_transcript | ||
| 22976116 | 22976791 | 42424 | 43099 | - | exon | coding_transcript | ||
| 22976116 | 22976791 | 42424 | 43099 | - | exon | coding_transcript | ||
| 22976116 | 22976151 | 42424 | 42459 | - | cds | coding_transcript | ||
| 22976116 | 22976151 | 42424 | 42459 | - | cds | coding_transcript | ||
| 22976152 | 22976791 | 42460 | 43099 | - | five_prime_utr | coding_transcript | ||
| 22976152 | 22976791 | 42460 | 43099 | - | five_prime_utr | coding_transcript | ||
Sets
Oligos
| Name/Sequence | Export |
|---|---|
|
CG6051[16613]::S000169_fly_pretag_rev
CCACATTTTTGGTCGTCAGCTGCGCCTTCTAGCGCCATTGGCCAGTCCTActtgtcgtcgtcatccttgtagtca
|
Fasta
|
|
CG6051[16613]::S000169_fly_pretag_fwd
TGGGTGTCCAGGGTGTGCAGAGTGTTCAGAGCGTTCAGGCCAGCGCCTCTgaagtgcataccaatcaggacccgc
|
Fasta
|