Clone: 3207692103829951 D04
Tagged gene: nudC
Identifier: FBgn0021768
| Clone | FlyFos016705(pRedFlp-Hgr)(nudC[34840]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad |
Genes in pFlyFos vector
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3L | ||||||||
| 16798094 | 16812632 | 20418 | 36018 | + | gene | nudC | coding_transcript | |
| 16798094 | 16812632 | 20418 | 36018 | + | mrna | FBtr0305912 | coding_transcript | |
| 16798094 | 16798452 | 20418 | 20776 | + | exon | coding_transcript | ||
| 16798094 | 16798452 | 20418 | 20776 | + | five_prime_utr | coding_transcript | ||
| 16798453 | 16801493 | 20777 | 23817 | + | intron | coding_transcript | ||
| 16800633 | 16800828 | 22957 | 23152 | - | exon | coding_transcript | ||
| 16800633 | 16800828 | 22957 | 23152 | - | five_prime_utr | coding_transcript | ||
| 16801494 | 16801719 | 23818 | 24043 | + | exon | coding_transcript | ||
| 16801494 | 16801644 | 23818 | 23968 | + | five_prime_utr | coding_transcript | ||
| 16801510 | 16812632 | 23834 | 36018 | + | mrna | FBtr0075328 | coding_transcript | |
| 16801510 | 16801719 | 23834 | 24043 | + | exon | coding_transcript | ||
| 16801510 | 16801644 | 23834 | 23968 | + | five_prime_utr | coding_transcript | ||
| 16801645 | 16801719 | 23969 | 24043 | + | cds | coding_transcript | ||
| 16801645 | 16801719 | 23969 | 24043 | + | cds | coding_transcript | ||
| 16801720 | 16801794 | 24044 | 24118 | + | intron | coding_transcript | ||
| 16801720 | 16801794 | 24044 | 24118 | + | intron | coding_transcript | ||
| 16801795 | 16802078 | 24119 | 24402 | + | exon | coding_transcript | ||
| 16801795 | 16802078 | 24119 | 24402 | + | cds | coding_transcript | ||
| 16801795 | 16802078 | 24119 | 24402 | + | exon | coding_transcript | ||
| 16801795 | 16802078 | 24119 | 24402 | + | cds | coding_transcript | ||
| 16802079 | 16802267 | 24403 | 24591 | + | intron | coding_transcript | ||
| 16802079 | 16802267 | 24403 | 24591 | + | intron | coding_transcript | ||
| 16802268 | 16802457 | 24592 | 24781 | + | exon | coding_transcript | ||
| 16802268 | 16802457 | 24592 | 24781 | + | cds | coding_transcript | ||
| 16802268 | 16802457 | 24592 | 24781 | + | exon | coding_transcript | ||
| 16802268 | 16802457 | 24592 | 24781 | + | cds | coding_transcript | ||
| 16802458 | 16812006 | 24782 | 34330 | + | intron | coding_transcript | ||
| 16802458 | 16812006 | 24782 | 34330 | + | intron | coding_transcript | ||
| 16802758 | 16822174 | 25082 | 45560 | - | gene | CG13024 | coding_transcript | |
| 16802758 | 16805140 | 25082 | 27464 | - | mrna | FBtr0273320 | coding_transcript | |
| 16802758 | 16803124 | 25082 | 25448 | - | exon | coding_transcript | ||
| 16802758 | 16803124 | 25082 | 25448 | - | exon | coding_transcript | ||
| 16802758 | 16803095 | 25082 | 25419 | - | three_prime_utr | coding_transcript | ||
| 16802758 | 16803095 | 25082 | 25419 | - | three_prime_utr | coding_transcript | ||
| 16803096 | 16803124 | 25420 | 25448 | - | cds | coding_transcript | ||
| 16803096 | 16803124 | 25420 | 25448 | - | cds | coding_transcript | ||
| 16803125 | 16803183 | 25449 | 25507 | - | intron | coding_transcript | ||
| 16803125 | 16803183 | 25449 | 25507 | - | intron | coding_transcript | ||
| 16803184 | 16803589 | 25508 | 25913 | - | exon | coding_transcript | ||
| 16803184 | 16803589 | 25508 | 25913 | - | cds | coding_transcript | ||
| 16803184 | 16803589 | 25508 | 25913 | - | exon | coding_transcript | ||
| 16803184 | 16803589 | 25508 | 25913 | - | cds | coding_transcript | ||
| 16803590 | 16803694 | 25914 | 26018 | - | intron | coding_transcript | ||
| 16803590 | 16803694 | 25914 | 26018 | - | intron | coding_transcript | ||
| 16803695 | 16803967 | 26019 | 26291 | - | exon | coding_transcript | ||
| 16803695 | 16803967 | 26019 | 26291 | - | cds | coding_transcript | ||
| 16803695 | 16803967 | 26019 | 26291 | - | exon | coding_transcript | ||
| 16803695 | 16803967 | 26019 | 26291 | - | cds | coding_transcript | ||
| 16803968 | 16804777 | 26292 | 27101 | - | intron | coding_transcript | ||
| 16804778 | 16805140 | 27102 | 27464 | - | exon | coding_transcript | ||
| 16804778 | 16805140 | 27102 | 27464 | - | five_prime_utr | coding_transcript | ||
| 16812007 | 16812404 | 34331 | 34728 | + | exon | coding_transcript | ||
| 16812007 | 16812404 | 34331 | 34728 | + | cds | coding_transcript | ||
| 16812007 | 16812404 | 34331 | 34728 | + | exon | coding_transcript | ||
| 16812007 | 16812404 | 34331 | 34728 | + | cds | coding_transcript | ||
| 16812405 | 16812467 | 34729 | 34791 | + | intron | coding_transcript | ||
| 16812405 | 16812467 | 34729 | 34791 | + | intron | coding_transcript | ||
| 16812468 | 16812632 | 34792 | 36018 | + | exon | coding_transcript | ||
| 16812468 | 16812632 | 34792 | 36018 | + | exon | coding_transcript | ||
| 16812468 | 16812519 | 34792 | 35905 | + | cds | coding_transcript | ||
| 16812468 | 16812519 | 34792 | 35905 | + | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 1482 | 1541 | 34841 | 34900 | + | cds | 2xTY1 | CLC | |
| 1548 | 2264 | 34907 | 35623 | + | cds | SGFP | CLC | |
| 2271 | 2312 | 35630 | 35671 | + | cds | V5 | CLC | |
| 2313 | 2336 | 35672 | 35695 | + | cds | Precision cut site | CLC | |
| 2337 | 2357 | 35696 | 35716 | + | cds | TEV | CLC | |
| 2358 | 2429 | 35717 | 35788 | + | cds | BLRP | CLC | |
| 3813 | 3846 | 35796 | 35829 | + | misc_recomb | FRT | CLC | |
| dmel-5.43-3L | ||||||||
| 16812520 | 16812632 | 35906 | 36018 | + | three_prime_utr | coding_transcript | ||
| 16812520 | 16812632 | 35906 | 36018 | + | three_prime_utr | coding_transcript | ||
Sets
Oligos
| Name/Sequence | Export |
|---|---|
|
nudC[34840]::S000169_fly_pretag_fwd
GATTTAAGCAACAGCATCCTGAGATGGACTTCTCCAAGTGTAAATTCAATgaagtgcataccaatcaggacccgc
|
Fasta
|
|
nudC[34840]::S000169_fly_pretag_rev
CAAGAGTGCGAAATCGAAAGTTTACAAGTTAAGTTGAGAATGTTAGATTActtgtcgtcgtcatccttgtagtca
|
Fasta
|