Clone: 02182476214419926 G10
Tagged gene: TM4SF
Identifier: FBgn0020372
| Clone | FlyFos015857(pRedFlp-Hgr)(TM4SF[16088]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | good | [view] |
Genes in pFlyFos vector
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-2R | ||||||||
| 19770708 | 19771835 | 12423 | 13550 | + | gene | PHDP | coding_transcript | |
| 19768340 | 19769954 | 14304 | 15918 | + | gene | CG4882 | coding_transcript | |
| 19765982 | 19768383 | 15875 | 19338 | - | gene | TM4SF | coding_transcript | |
| 19765982 | 19768383 | 15875 | 19338 | - | mrna | FBtr0072130 | coding_transcript | |
| 19765982 | 19768383 | 15875 | 19338 | - | mrna | FBtr0100255 | coding_transcript | |
| 19767954 | 19768383 | 15875 | 17366 | - | exon | coding_transcript | ||
| 19767954 | 19768383 | 15875 | 17366 | - | exon | coding_transcript | ||
| 19767954 | 19768383 | 15875 | 17366 | - | three_prime_utr | coding_transcript | ||
| 19768173 | 19768383 | 15875 | 16085 | - | three_prime_utr | coding_transcript | ||
| 19767954 | 19768172 | 16086 | 17366 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 16162 | 16195 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 16203 | 16274 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 16275 | 16295 | - | cds | TEV | CLC | |
| 2313 | 2336 | 16296 | 16319 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 16320 | 16361 | - | cds | V5 | CLC | |
| 1548 | 2264 | 16368 | 17084 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 17091 | 17150 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-2R | ||||||||
| 19767878 | 19767953 | 17367 | 17442 | - | intron | coding_transcript | ||
| 19767878 | 19767953 | 17367 | 17442 | - | intron | coding_transcript | ||
| 19767677 | 19767877 | 17443 | 17643 | - | exon | coding_transcript | ||
| 19767677 | 19767877 | 17443 | 17643 | - | cds | coding_transcript | ||
| 19767677 | 19767877 | 17443 | 17643 | - | exon | coding_transcript | ||
| 19767677 | 19767877 | 17443 | 17643 | - | three_prime_utr | coding_transcript | ||
| 19767584 | 19767676 | 17644 | 17736 | - | intron | coding_transcript | ||
| 19767584 | 19767676 | 17644 | 17736 | - | intron | coding_transcript | ||
| 19767398 | 19767583 | 17737 | 17922 | - | exon | coding_transcript | ||
| 19767398 | 19767583 | 17737 | 17922 | - | cds | coding_transcript | ||
| 19767398 | 19767583 | 17737 | 17922 | - | exon | coding_transcript | ||
| 19767398 | 19767583 | 17737 | 17922 | - | three_prime_utr | coding_transcript | ||
| 19767336 | 19767397 | 17923 | 17984 | - | intron | coding_transcript | ||
| 19767336 | 19767397 | 17923 | 17984 | - | intron | coding_transcript | ||
| 19765982 | 19767335 | 17985 | 19338 | - | exon | coding_transcript | ||
| 19766602 | 19767335 | 17985 | 18718 | - | three_prime_utr | coding_transcript | ||
| 19767147 | 19767335 | 17985 | 18173 | - | exon | coding_transcript | ||
| 19767147 | 19767335 | 17985 | 18173 | - | cds | coding_transcript | ||
| 19766482 | 19767146 | 18174 | 18838 | - | intron | coding_transcript | ||
| 19766416 | 19766601 | 18719 | 18904 | - | cds | coding_transcript | ||
| 19765982 | 19766481 | 18839 | 19338 | - | exon | coding_transcript | ||
| 19766416 | 19766481 | 18839 | 18904 | - | cds | coding_transcript | ||
| 19765982 | 19766415 | 18905 | 19338 | - | five_prime_utr | coding_transcript | ||
| 19765982 | 19766415 | 18905 | 19338 | - | five_prime_utr | coding_transcript | ||
| 19757798 | 19764965 | 20355 | 27522 | - | gene | ken | coding_transcript | |
| 19754124 | 19756139 | 29181 | 31196 | + | gene | Thiolase | coding_transcript | |
| 19752944 | 19754177 | 31143 | 32376 | - | gene | CG5569 | coding_transcript | |
| 19750485 | 19752917 | 32403 | 34835 | + | gene | CG4585 | coding_transcript | |
| 19746590 | 19750135 | 35185 | 38730 | + | gene | TBPH | coding_transcript | |
| 19740801 | 19746314 | 39006 | 44519 | + | gene | bgcn | coding_transcript | |
| 19743478 | 19744457 | 40863 | 41842 | + | gene | wibg | coding_transcript | |
| 19739106 | 19740772 | 44548 | 46214 | - | gene | gbb | coding_transcript | |
| 19734693 | 19738619 | 46701 | 50627 | + | gene | ytr | coding_transcript | |
| 19736769 | 19737822 | 47498 | 48551 | + | gene | eIF6 | coding_transcript | |
| 19732415 | 19734547 | 50773 | 52905 | - | gene | CG5554 | coding_transcript | |
| 19731006 | 19732248 | 53072 | 54314 | + | gene | usnp | coding_transcript | |
Sets
Oligos
| Name/Sequence | Export |
|---|---|
|
TM4SF[16088]::S000169_fly_pretag_fwd
CACCCGGGCAGCGGGTTTTAAAAACTGCTCTGCCCTCGGCCATGCACAAAgaagtgcataccaatcaggacccgc
|
Fasta
|
|
TM4SF[16088]::S000169_fly_pretag_rev
CTTTGGAGTTTCCATAAATTTTTGCATCCTTAAAAGCTAATCGTCTGTCActtgtcgtcgtcatccttgtagtca
|
Fasta
|