Clone: 02182476214419926 H05
Tagged gene: shd
Identifier: FBgn0003388
Clone | FlyFos015816(pRedFlp-Hgr)(shd[35754]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
---|---|
Library | FlyFos 5.43 D.mel in E. coli EPI300 |
Genome | Species: Drosophila melanogaster, Release: 5.43 |
Validation
Type | Status | Download / View |
---|---|---|
Grows in selection | good | |
NGS-based tag validation | good | [view] |
Genes in pFlyFos vector
Gene | Clone relative | Genome relative | |||||
---|---|---|---|---|---|---|---|
Name | Length | Start | End | Strand | Start | End | Strand |
DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
---|---|---|---|---|---|---|---|---|
pFlyFos | ||||||||
1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
dmel-5.43-3L | ||||||||
14621260 | 14625173 | 25262 | 29175 | + | gene | RecQ5 | coding_transcript | |
14615910 | 14621274 | 29161 | 34525 | - | gene | CG9628 | coding_transcript | |
14607558 | 14615305 | 35130 | 43939 | - | gene | shd | coding_transcript | |
14607558 | 14615305 | 35130 | 43939 | - | mrna | FBtr0075676 | coding_transcript | |
14614573 | 14615305 | 35130 | 36924 | - | exon | coding_transcript | ||
14614684 | 14615305 | 35130 | 35751 | - | three_prime_utr | coding_transcript | ||
14612930 | 14614945 | 35490 | 38567 | - | mrna | FBtr0304700 | coding_transcript | |
14614573 | 14614945 | 35490 | 36924 | - | exon | coding_transcript | ||
14614684 | 14614945 | 35490 | 35751 | - | three_prime_utr | coding_transcript | ||
14614573 | 14614683 | 35752 | 36924 | - | cds | coding_transcript | ||
14614573 | 14614683 | 35752 | 36924 | - | cds | coding_transcript | ||
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
2437 | 2470 | 35828 | 35861 | - | misc_recomb | FRT | CLC | |
2358 | 2429 | 35869 | 35940 | - | cds | BLRP | CLC | |
2337 | 2357 | 35941 | 35961 | - | cds | TEV | CLC | |
2313 | 2336 | 35962 | 35985 | - | cds | Precision cut site | CLC | |
2271 | 2312 | 35986 | 36027 | - | cds | V5 | CLC | |
1548 | 2264 | 36034 | 36750 | - | cds | SGFP | CLC | |
1482 | 1541 | 36757 | 36816 | - | cds | 2xTY1 | CLC | |
dmel-5.43-3L | ||||||||
14614497 | 14614572 | 36925 | 37000 | - | intron | coding_transcript | ||
14614497 | 14614572 | 36925 | 37000 | - | intron | coding_transcript | ||
14614281 | 14614496 | 37001 | 37216 | - | exon | coding_transcript | ||
14614281 | 14614496 | 37001 | 37216 | - | cds | coding_transcript | ||
14614281 | 14614496 | 37001 | 37216 | - | exon | coding_transcript | ||
14614281 | 14614496 | 37001 | 37216 | - | cds | coding_transcript | ||
14614153 | 14614280 | 37217 | 37344 | - | intron | coding_transcript | ||
14614153 | 14614280 | 37217 | 37344 | - | intron | coding_transcript | ||
14613913 | 14614152 | 37345 | 37584 | - | exon | coding_transcript | ||
14613913 | 14614152 | 37345 | 37584 | - | cds | coding_transcript | ||
14613913 | 14614152 | 37345 | 37584 | - | exon | coding_transcript | ||
14613913 | 14614152 | 37345 | 37584 | - | cds | coding_transcript | ||
14613856 | 14613912 | 37585 | 37641 | - | intron | coding_transcript | ||
14613856 | 14613912 | 37585 | 37641 | - | intron | coding_transcript | ||
14613678 | 14613855 | 37642 | 37819 | - | exon | coding_transcript | ||
14613678 | 14613855 | 37642 | 37819 | - | cds | coding_transcript | ||
14613678 | 14613855 | 37642 | 37819 | - | exon | coding_transcript | ||
14613678 | 14613855 | 37642 | 37819 | - | cds | coding_transcript | ||
14613613 | 14613677 | 37820 | 37884 | - | intron | coding_transcript | ||
14613613 | 14613677 | 37820 | 37884 | - | intron | coding_transcript | ||
14613018 | 14613612 | 37885 | 38479 | - | exon | coding_transcript | ||
14613018 | 14613612 | 37885 | 38479 | - | cds | coding_transcript | ||
14613018 | 14613612 | 37885 | 38479 | - | exon | coding_transcript | ||
14613056 | 14613612 | 37885 | 38441 | - | cds | coding_transcript | ||
14613018 | 14613055 | 38442 | 38479 | - | five_prime_utr | coding_transcript | ||
14612828 | 14613017 | 38480 | 38669 | - | intron | coding_transcript | ||
14612961 | 14613017 | 38480 | 38536 | - | intron | coding_transcript | ||
14612930 | 14612960 | 38537 | 38567 | - | exon | coding_transcript | ||
14612930 | 14612960 | 38537 | 38567 | - | five_prime_utr | coding_transcript | ||
14612533 | 14612827 | 38670 | 38964 | - | exon | coding_transcript | ||
14612545 | 14612827 | 38670 | 38952 | - | cds | coding_transcript | ||
14612533 | 14612544 | 38953 | 38964 | - | five_prime_utr | coding_transcript | ||
14608031 | 14612532 | 38965 | 43466 | - | intron | coding_transcript | ||
14607558 | 14608030 | 43467 | 43939 | - | exon | coding_transcript | ||
14607558 | 14608030 | 43467 | 43939 | - | five_prime_utr | coding_transcript |
Sets
Oligos
Name/Sequence | Export |
---|---|
shd[35754]::S000169_fly_pretag_fwd
TGCTGGCACCCAAAACTCCACTCAGTCTAAGACTCAGCGATCGGGTTTTCgaagtgcataccaatcaggacccgc
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|
shd[35754]::S000169_fly_pretag_rev
TGAGGGTAGGCACTGTTTTTCGGATCAGTTTTCTAAAGCACCCATTATCActtgtcgtcgtcatccttgtagtca
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