Clone: 02182476214419926 H05

Tagged gene: shd
Identifier: FBgn0003388

Clone FlyFos015816(pRedFlp-Hgr)(shd[35754]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT
Library FlyFos 5.43 D.mel in E. coli EPI300
Genome Species: Drosophila melanogaster, Release: 5.43

Validation

Type Status Download / View
Grows in selection good
NGS-based tag validation good [view]

Genes in pFlyFos vector

Gene Clone relative Genome relative
Name Length Start End Strand Start End Strand
DsRed 716 8417 9132 + 8417 9132 +

Features

Start (Source) End (Source) Start End Strand Type Name Source
pFlyFos
1 107 1 107 - cds LacZ epicentre
4 21 4 21 - primer_bind CC2_rev epicentre
310 593 310 593 + misc_recomb attB epicentre
727 1386 727 1386 - cds Cat epicentre
1605 1952 1605 1952 + cds redF epicentre
2336 2953 2336 2953 + rep_origin oriV epicentre
2953 3007 2953 3007 + rep_origin ori2 epicentre
3347 4102 3347 4102 + cds repE epicentre
4681 5856 4681 5856 + cds parA epicentre
5856 6827 5856 6827 + cds parB epicentre
6900 7417 6900 7417 + repeat_region parC epicentre
7633 8031 7633 8031 + misc_binding cos epicentre
8049 8082 8049 8082 + misc_recomb loxP epicentre
8182 8416 8182 8416 + promoter 3xP3 epicentre
8417 9132 8417 9132 + gene DsRed epicentre
8452 9132 8452 9132 + cds DsRed epicentre
9284 9334 9284 9334 + terminator SV40 epicentre
9408 9630 9408 9630 - cds LacZ epicentre
9559 9576 9559 9576 + primer_bind T7 epicentre
9610 9627 9610 9627 + primer_bind CC2_fwd epicentre
dmel-5.43-3L
14621260 14625173 25262 29175 + gene RecQ5 coding_transcript
14615910 14621274 29161 34525 - gene CG9628 coding_transcript
14607558 14615305 35130 43939 - gene shd coding_transcript
14607558 14615305 35130 43939 - mrna FBtr0075676 coding_transcript
14614573 14615305 35130 36924 - exon coding_transcript
14614684 14615305 35130 35751 - three_prime_utr coding_transcript
14612930 14614945 35490 38567 - mrna FBtr0304700 coding_transcript
14614573 14614945 35490 36924 - exon coding_transcript
14614684 14614945 35490 35751 - three_prime_utr coding_transcript
14614573 14614683 35752 36924 - cds coding_transcript
14614573 14614683 35752 36924 - cds coding_transcript
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG
2437 2470 35828 35861 - misc_recomb FRT CLC
2358 2429 35869 35940 - cds BLRP CLC
2337 2357 35941 35961 - cds TEV CLC
2313 2336 35962 35985 - cds Precision cut site CLC
2271 2312 35986 36027 - cds V5 CLC
1548 2264 36034 36750 - cds SGFP CLC
1482 1541 36757 36816 - cds 2xTY1 CLC
dmel-5.43-3L
14614497 14614572 36925 37000 - intron coding_transcript
14614497 14614572 36925 37000 - intron coding_transcript
14614281 14614496 37001 37216 - exon coding_transcript
14614281 14614496 37001 37216 - cds coding_transcript
14614281 14614496 37001 37216 - exon coding_transcript
14614281 14614496 37001 37216 - cds coding_transcript
14614153 14614280 37217 37344 - intron coding_transcript
14614153 14614280 37217 37344 - intron coding_transcript
14613913 14614152 37345 37584 - exon coding_transcript
14613913 14614152 37345 37584 - cds coding_transcript
14613913 14614152 37345 37584 - exon coding_transcript
14613913 14614152 37345 37584 - cds coding_transcript
14613856 14613912 37585 37641 - intron coding_transcript
14613856 14613912 37585 37641 - intron coding_transcript
14613678 14613855 37642 37819 - exon coding_transcript
14613678 14613855 37642 37819 - cds coding_transcript
14613678 14613855 37642 37819 - exon coding_transcript
14613678 14613855 37642 37819 - cds coding_transcript
14613613 14613677 37820 37884 - intron coding_transcript
14613613 14613677 37820 37884 - intron coding_transcript
14613018 14613612 37885 38479 - exon coding_transcript
14613018 14613612 37885 38479 - cds coding_transcript
14613018 14613612 37885 38479 - exon coding_transcript
14613056 14613612 37885 38441 - cds coding_transcript
14613018 14613055 38442 38479 - five_prime_utr coding_transcript
14612828 14613017 38480 38669 - intron coding_transcript
14612961 14613017 38480 38536 - intron coding_transcript
14612930 14612960 38537 38567 - exon coding_transcript
14612930 14612960 38537 38567 - five_prime_utr coding_transcript
14612533 14612827 38670 38964 - exon coding_transcript
14612545 14612827 38670 38952 - cds coding_transcript
14612533 14612544 38953 38964 - five_prime_utr coding_transcript
14608031 14612532 38965 43466 - intron coding_transcript
14607558 14608030 43467 43939 - exon coding_transcript
14607558 14608030 43467 43939 - five_prime_utr coding_transcript

Sets

Oligos

Name/Sequence Export
shd[35754]::S000169_fly_pretag_fwd
TGCTGGCACCCAAAACTCCACTCAGTCTAAGACTCAGCGATCGGGTTTTCgaagtgcataccaatcaggacccgc
fasta Fasta
shd[35754]::S000169_fly_pretag_rev
TGAGGGTAGGCACTGTTTTTCGGATCAGTTTTCTAAAGCACCCATTATCActtgtcgtcgtcatccttgtagtca
fasta Fasta