Clone: 02182476214419926 H04
Tagged gene: Rpn9
Identifier: FBgn0028691
Clone | FlyFos015808(pRedFlp-Hgr)(Rpn9[36279]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
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Library | FlyFos 5.43 D.mel in E. coli EPI300 |
Genome | Species: Drosophila melanogaster, Release: 5.43 |
Validation
Type | Status | Download / View |
---|---|---|
Grows in selection | good | |
NGS-based tag validation | good | [view] |
Genes in pFlyFos vector
Gene | Clone relative | Genome relative | |||||
---|---|---|---|---|---|---|---|
Name | Length | Start | End | Strand | Start | End | Strand |
DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features
Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
---|---|---|---|---|---|---|---|---|
pFlyFos | ||||||||
1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
dmel-5.43-3R | ||||||||
19578600 | 19580345 | 13247 | 14992 | - | gene | Tbp-1 | coding_transcript | |
19576659 | 19578552 | 15040 | 16933 | + | gene | RanBP3 | coding_transcript | |
19559046 | 19576868 | 16724 | 34546 | - | gene | Hmgcr | coding_transcript | |
19557225 | 19559184 | 34408 | 37429 | + | gene | Rpn9 | coding_transcript | |
19557225 | 19559184 | 34408 | 37429 | + | mrna | FBtr0084469 | coding_transcript | |
19558974 | 19559184 | 34408 | 34618 | + | exon | coding_transcript | ||
19558974 | 19559184 | 34408 | 34618 | + | five_prime_utr | coding_transcript | ||
19558633 | 19558973 | 34619 | 34959 | + | intron | coding_transcript | ||
19557225 | 19558731 | 34861 | 37429 | + | mrna | FBtr0084470 | coding_transcript | |
19558518 | 19558731 | 34861 | 35074 | + | exon | coding_transcript | ||
19558628 | 19558731 | 34861 | 34964 | + | five_prime_utr | coding_transcript | ||
19558518 | 19558632 | 34960 | 35074 | + | exon | coding_transcript | ||
19558628 | 19558632 | 34960 | 34964 | + | five_prime_utr | coding_transcript | ||
19558518 | 19558627 | 34965 | 35074 | + | cds | coding_transcript | ||
19558518 | 19558627 | 34965 | 35074 | + | cds | coding_transcript | ||
19558463 | 19558517 | 35075 | 35129 | + | intron | coding_transcript | ||
19558463 | 19558517 | 35075 | 35129 | + | intron | coding_transcript | ||
19558349 | 19558462 | 35130 | 35243 | + | exon | coding_transcript | ||
19558349 | 19558462 | 35130 | 35243 | + | cds | coding_transcript | ||
19558349 | 19558462 | 35130 | 35243 | + | exon | coding_transcript | ||
19558349 | 19558462 | 35130 | 35243 | + | cds | coding_transcript | ||
19558296 | 19558348 | 35244 | 35296 | + | intron | coding_transcript | ||
19558296 | 19558348 | 35244 | 35296 | + | intron | coding_transcript | ||
19557765 | 19558295 | 35297 | 35827 | + | exon | coding_transcript | ||
19557765 | 19558295 | 35297 | 35827 | + | cds | coding_transcript | ||
19557765 | 19558295 | 35297 | 35827 | + | exon | coding_transcript | ||
19557765 | 19558295 | 35297 | 35827 | + | cds | coding_transcript | ||
19557704 | 19557764 | 35828 | 35888 | + | intron | coding_transcript | ||
19557704 | 19557764 | 35828 | 35888 | + | intron | coding_transcript | ||
19557225 | 19557703 | 35889 | 37429 | + | exon | coding_transcript | ||
19557225 | 19557703 | 35889 | 37429 | + | exon | coding_transcript | ||
19557310 | 19557703 | 35889 | 37344 | + | cds | coding_transcript | ||
19557310 | 19557703 | 35889 | 37344 | + | cds | coding_transcript | ||
p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
1482 | 1541 | 36280 | 36339 | + | cds | 2xTY1 | CLC | |
1548 | 2264 | 36346 | 37062 | + | cds | SGFP | CLC | |
2271 | 2312 | 37069 | 37110 | + | cds | V5 | CLC | |
2313 | 2336 | 37111 | 37134 | + | cds | Precision cut site | CLC | |
2337 | 2357 | 37135 | 37155 | + | cds | TEV | CLC | |
2358 | 2429 | 37156 | 37227 | + | cds | BLRP | CLC | |
3813 | 3846 | 37235 | 37268 | + | misc_recomb | FRT | CLC | |
dmel-5.43-3R | ||||||||
19557225 | 19557309 | 37345 | 37429 | + | three_prime_utr | coding_transcript | ||
19557225 | 19557309 | 37345 | 37429 | + | three_prime_utr | coding_transcript | ||
19549086 | 19557227 | 37427 | 45568 | - | gene | CG10365 | coding_transcript | |
19545198 | 19546343 | 48311 | 49456 | + | gene | CG10232 | coding_transcript |
Sets
Oligos
Name/Sequence | Export |
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Rpn9[36279]::S000169_fly_pretag_fwd
CGAACATGGAGAAACTGATGGAGAATCGTGCCGCCGAAATCCTCACCAATgaagtgcataccaatcaggacccgc
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Rpn9[36279]::S000169_fly_pretag_rev
CGCAAAATGTGAATATGTGGGATCGTCTAGATCAGGCGAAACTAAAACTActtgtcgtcgtcatccttgtagtca
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