Clone: 7008786456273952 H01
Tagged gene: CG11876
Identifier: FBgn0039635
| Clone | FlyFos015256(pRedFlp-Hgr)(CG11876[19108]::S000169_fly_pretag)::2XTY1-SGFP-V5-preTEV-BLRP-3XFLAGdFRT |
|---|---|
| Library | FlyFos 5.43 D.mel in E. coli EPI300 |
| Genome | Species: Drosophila melanogaster, Release: 5.43 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good | |
| NGS-based tag validation | bad | |
| Whole tag sequencing | incomplete | download [show/hide details] |
GENOME<<>>TAG TAG<<>>GENOME
PREDICTED GACGCTGGAGGCCCACGCCCTGCCCCGCGTTCAGGATCTCGTGGAGGCGACTCTTAAGGTCTTGGGTGGCAAAGTGGGCAAGGCCGCTGCGGCCAACAAGGAAGTGCATACCAATCAGGACCCGCTGGACGAGGTTCACACAAACCAAGATCCACTTGATGAATTCATGGTGTCCAAGGGCGAGGAGCTGTTCACCGGCGTGGTGCCCATCCTGGTGGAGCTGGATGGCGACGTGAACGGCCACAAGTTCAGCGTGCGCGGCGAGGGCGAGGGCGACGCCACCAACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTGGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGATCACATGAAGCAGCACGATTTCTTCAAGAGCGCCATGCCCGAGGGCTACGTGCAGGAGCGCACCATCAGCTTCAAGGATGACGGCACCTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGATACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGATTTCAAGGAGGATGGCAACATCCTGGGCCACAAGCTGGAGTACAACTTCAACAGCCACAACGTGTACATCACCGCCGATAAGCAGAAGAACGGCATCAAGGCCAACTTCAAGATCCGCCACAATGTGGAGGATGGCTCCGTGCAGCTGGCCGATCACTACCAGCAGAACACCCCCATCGGCGACGGCCCAGTGCTGCTGCCCGATAACCACTACCTGAGCACCCAGAGCGTGCTGTCCAAGGACCCCAACGAGAAGCGCGATCACATGGTGCTGCTGGAGTTCGTGACCGCCGCCGGCATCACCCTGGGCATGGATGAGCTGTACAAGCTCGAGGGCAAGCCCATCCCCAACCCCCTGCTGGGCCTGGATAGCACCCTGGAGGTGCTGTTCCAGGGCCCCGAGAACCTGTACTTCCAGGGCATGGCCAGCAGCCTGCGCCAGATCCTGGATAGCCAGAAGATGGAGTGGCGCAGCAACGCCGGCGGCAGCGGATCCTCGGGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGTCGACAGATTATAAAGACCACGATGGAGACTATAAAGATCATGACATTGACTACAAGGATGACGACGACAAGTAGGAACTCAGGACTAGCCAGCCTCCCGATCGGAACCCCCAGCTAACTAAATTTATAGTCCAAGTCGAAACGCTGCCTCTGGTCTAACCGAGCTGCCCCC
COVERAGE 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111011111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
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DS2 ACGTGAACGGCCACA-GTTCAGCGTGCGCGGCGAGGGCGAGGGCGACGCCACCAACGCCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTGGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGATCACATGAAGCAGCACGATTTCTTCAAGAGCGCCATGCCCGAGGGCTACGTGCAGGAGCGCACCATCAGCTTCAAGGATGACGGCACCTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGATACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGATTTCAAGGAGGATGGCAACATCCTGGGCCACAAGCTGGAGTACAACTTCAACAGCCACAACG
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EV1 GGCTCCGTGCAGCTGGCCGATCACTACCAGCAGAACACCCCCATCGGCGACGGCCCAGTGCTGCTGCCCGATAACCACTACCTGAGCACCCAGAGCGTGCTGTCCAAGGACCCCAACGAGAAGCGCGATCACATGGTGCTGCTGGAGTTCGTGACCGCCGCCGGCATCACCCTGGGCATGGATGAGCTGTACAAGCTCGAGGGCAAGCCCATCCCCAACCCCCTGCTGGGCCTGGATAGCACCCTGGAGGTGCTGTTCCAGGGCCCCGAGAACCTGTACTTCCAGGGCATGGCCAGCAGCCTGCGCCAGATCCTGGATAGCCAGAAGATGGAGTGGCGCAGCAACGCCGGCGGCAGCGGATCCTCGGGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGTCGACAGATTATAAAGACCACGATGGAGACTATAAAGATCATGACATTGACTACAAGGATGACGACGACAAGTAAGAACTCAGGACTAGCCAGCCTCCCGATCGGAACCCCCAGCTAACTAAATTTATAGCCCAAGTCGAAACGCTGCCTCTGGTCTAACCGATCTGCCACC
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Genes in pFlyFos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| DsRed | 716 | 8417 | 9132 | + | 8417 | 9132 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pFlyFos | ||||||||
| 1 | 107 | 1 | 107 | - | cds | LacZ | epicentre | |
| 4 | 21 | 4 | 21 | - | primer_bind | CC2_rev | epicentre | |
| 310 | 593 | 310 | 593 | + | misc_recomb | attB | epicentre | |
| 727 | 1386 | 727 | 1386 | - | cds | Cat | epicentre | |
| 1605 | 1952 | 1605 | 1952 | + | cds | redF | epicentre | |
| 2336 | 2953 | 2336 | 2953 | + | rep_origin | oriV | epicentre | |
| 2953 | 3007 | 2953 | 3007 | + | rep_origin | ori2 | epicentre | |
| 3347 | 4102 | 3347 | 4102 | + | cds | repE | epicentre | |
| 4681 | 5856 | 4681 | 5856 | + | cds | parA | epicentre | |
| 5856 | 6827 | 5856 | 6827 | + | cds | parB | epicentre | |
| 6900 | 7417 | 6900 | 7417 | + | repeat_region | parC | epicentre | |
| 7633 | 8031 | 7633 | 8031 | + | misc_binding | cos | epicentre | |
| 8049 | 8082 | 8049 | 8082 | + | misc_recomb | loxP | epicentre | |
| 8182 | 8416 | 8182 | 8416 | + | promoter | 3xP3 | epicentre | |
| 8417 | 9132 | 8417 | 9132 | + | gene | DsRed | epicentre | |
| 8452 | 9132 | 8452 | 9132 | + | cds | DsRed | epicentre | |
| 9284 | 9334 | 9284 | 9334 | + | terminator | SV40 | epicentre | |
| 9408 | 9630 | 9408 | 9630 | - | cds | LacZ | epicentre | |
| 9559 | 9576 | 9559 | 9576 | + | primer_bind | T7 | epicentre | |
| 9610 | 9627 | 9610 | 9627 | + | primer_bind | CC2_fwd | epicentre | |
| dmel-5.43-3R | ||||||||
| 24944048 | 24948597 | 12190 | 16739 | + | gene | yemalpha | coding_transcript | |
| 24942113 | 24944112 | 16675 | 18674 | - | gene | CG11877 | coding_transcript | |
| 24938793 | 24941919 | 18868 | 23056 | - | gene | CG11876 | coding_transcript | |
| 24938793 | 24941919 | 18868 | 23056 | - | mrna | FBtr0085366 | coding_transcript | |
| 24938827 | 24941919 | 18868 | 23022 | - | mrna | FBtr0085369 | coding_transcript | |
| 24941470 | 24941919 | 18868 | 20379 | - | exon | coding_transcript | ||
| 24941470 | 24941919 | 18868 | 20379 | - | exon | coding_transcript | ||
| 24941682 | 24941919 | 18868 | 19105 | - | three_prime_utr | coding_transcript | ||
| 24941682 | 24941919 | 18868 | 19105 | - | three_prime_utr | coding_transcript | ||
| 24941470 | 24941681 | 19106 | 20379 | - | cds | coding_transcript | ||
| 24941470 | 24941681 | 19106 | 20379 | - | cds | coding_transcript | ||
| p2XTY1-SGFP-V5-preTEV-BLRP-3XFLAG | ||||||||
| 2437 | 2470 | 19182 | 19215 | - | misc_recomb | FRT | CLC | |
| 2358 | 2429 | 19223 | 19294 | - | cds | BLRP | CLC | |
| 2337 | 2357 | 19295 | 19315 | - | cds | TEV | CLC | |
| 2313 | 2336 | 19316 | 19339 | - | cds | Precision cut site | CLC | |
| 2271 | 2312 | 19340 | 19381 | - | cds | V5 | CLC | |
| 1548 | 2264 | 19388 | 20104 | - | cds | SGFP | CLC | |
| 1482 | 1541 | 20111 | 20170 | - | cds | 2xTY1 | CLC | |
| dmel-5.43-3R | ||||||||
| 24941409 | 24941469 | 20380 | 20440 | - | intron | coding_transcript | ||
| 24941409 | 24941469 | 20380 | 20440 | - | intron | coding_transcript | ||
| 24941289 | 24941408 | 20441 | 20560 | - | exon | coding_transcript | ||
| 24941289 | 24941408 | 20441 | 20560 | - | cds | coding_transcript | ||
| 24941289 | 24941408 | 20441 | 20560 | - | exon | coding_transcript | ||
| 24941289 | 24941408 | 20441 | 20560 | - | cds | coding_transcript | ||
| 24941228 | 24941288 | 20561 | 20621 | - | intron | coding_transcript | ||
| 24941228 | 24941288 | 20561 | 20621 | - | intron | coding_transcript | ||
| 24940816 | 24941227 | 20622 | 21033 | - | exon | coding_transcript | ||
| 24940816 | 24941227 | 20622 | 21033 | - | cds | coding_transcript | ||
| 24940816 | 24941227 | 20622 | 21033 | - | exon | coding_transcript | ||
| 24940816 | 24941227 | 20622 | 21033 | - | cds | coding_transcript | ||
| 24939878 | 24940815 | 21034 | 21971 | - | intron | coding_transcript | ||
| 24939878 | 24940815 | 21034 | 21971 | - | intron | coding_transcript | ||
| 24938793 | 24940668 | 21181 | 23056 | - | mrna | FBtr0085367 | coding_transcript | |
| 24938827 | 24940668 | 21181 | 23022 | - | mrna | FBtr0085368 | coding_transcript | |
| 24940151 | 24940668 | 21181 | 21698 | - | exon | coding_transcript | ||
| 24940151 | 24940668 | 21181 | 21698 | - | exon | coding_transcript | ||
| 24940619 | 24940668 | 21181 | 21230 | - | three_prime_utr | coding_transcript | ||
| 24940619 | 24940668 | 21181 | 21230 | - | three_prime_utr | coding_transcript | ||
| 24940151 | 24940618 | 21231 | 21698 | - | cds | coding_transcript | ||
| 24940151 | 24940618 | 21231 | 21698 | - | cds | coding_transcript | ||
| 24939878 | 24940150 | 21699 | 21971 | - | intron | coding_transcript | ||
| 24939878 | 24940150 | 21699 | 21971 | - | intron | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | exon | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | cds | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | exon | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | cds | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | exon | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | cds | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | exon | coding_transcript | ||
| 24939716 | 24939877 | 21972 | 22133 | - | cds | coding_transcript | ||
| 24939172 | 24939715 | 22134 | 22677 | - | intron | coding_transcript | ||
| 24939172 | 24939715 | 22134 | 22677 | - | intron | coding_transcript | ||
| 24939172 | 24939715 | 22134 | 22677 | - | intron | coding_transcript | ||
| 24939172 | 24939715 | 22134 | 22677 | - | intron | coding_transcript | ||
| 24938827 | 24939171 | 22678 | 23022 | - | exon | coding_transcript | ||
| 24938827 | 24939171 | 22678 | 23022 | - | exon | coding_transcript | ||
| 24938931 | 24939171 | 22678 | 22918 | - | exon | coding_transcript | ||
| 24938931 | 24939171 | 22678 | 22918 | - | exon | coding_transcript | ||
| 24938980 | 24939171 | 22678 | 22869 | - | cds | coding_transcript | ||
| 24938980 | 24939171 | 22678 | 22869 | - | cds | coding_transcript | ||
| 24938980 | 24939171 | 22678 | 22869 | - | cds | coding_transcript | ||
| 24938980 | 24939171 | 22678 | 22869 | - | cds | coding_transcript | ||
| 24938827 | 24938979 | 22870 | 23022 | - | five_prime_utr | coding_transcript | ||
| 24938827 | 24938979 | 22870 | 23022 | - | five_prime_utr | coding_transcript | ||
| 24938931 | 24938979 | 22870 | 22918 | - | five_prime_utr | coding_transcript | ||
| 24938931 | 24938979 | 22870 | 22918 | - | five_prime_utr | coding_transcript | ||
| 24938863 | 24938930 | 22919 | 22986 | - | intron | coding_transcript | ||
| 24938863 | 24938930 | 22919 | 22986 | - | intron | coding_transcript | ||
| 24938793 | 24938862 | 22987 | 23056 | - | exon | coding_transcript | ||
| 24938793 | 24938862 | 22987 | 23056 | - | five_prime_utr | coding_transcript | ||
| 24938793 | 24938862 | 22987 | 23056 | - | exon | coding_transcript | ||
| 24938793 | 24938862 | 22987 | 23056 | - | five_prime_utr | coding_transcript | ||
| 24934775 | 24938542 | 23307 | 27074 | + | gene | CG11874 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
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CG11876[19108]::S000169_fly_pretag_rev
TTAGTTAGCTGGGGGTTCCGATCGGGAGGCTGGCTAGTCCTGAGTTCCTActtgtcgtcgtcatccttgtagtca
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Fasta
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CG11876[19108]::S000169_fly_pretag_fwd
CTCTTAAGGTCTTGGGTGGCAAAGTGGGCAAGGCCGCTGCGGCCAACAAGgaagtgcataccaatcaggacccgc
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Fasta
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