Clone: 9347172996193398 E03

Tagged gene: lim-7
Identifier: WBGene00002989

Clone WRM061A_F09(pRedFlp-Hgr)(lim-7[28501]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag)dFRT::unc-119-Nat
Library UBC N2 fosmid library (Don Moreman) in E. coli EPI300
Genome Species: Caenorhabditis elegans, Release: 184

Validation(click to hide details)

Type Status Download / View
Grows in selection good
NGS-based tag validation good [view]
Whole tag sequencing full (with mutations) download [show/hide details]

Genes in pCC1fos vector(click to hide details)

Gene Clone relative Genome relative
Name Length Start End Strand Start End Strand
unc-119-Nat 2761 240 3000 - 1031 3791 +

Features(click to show details)

Start (Source) End (Source) Start End Strand Type Name Source
pCC1fos
1 86 1 86 - cds LacZ epicentre
115 140 115 140 - primer_bind CC1rev epicentre
pTag[unc-119-Nat]
1031 3791 240 3000 - gene unc-119-Nat EMBL
3426 3532 499 605 - CDS unc-119 EMBL
2997 3374 657 1034 - CDS unc-119 EMBL
2842 2953 1078 1189 - CDS unc-119 EMBL
2687 2743 1288 1344 - CDS unc-119 EMBL
1604 1676 2355 2427 + promoter gb2 EMBL
1034 1603 2428 2997 + CDS NatR EMBL
pCC1fos
416 1075 3177 3836 - cds Cat epicentre
1294 1641 4055 4402 + cds redF epicentre
2025 2642 4786 5403 + rep_origin oriV epicentre
2642 2696 5403 5457 + rep_origin ori2 epicentre
3036 3791 5797 6552 + cds repE epicentre
4370 5545 7131 8306 + cds parA epicentre
5545 6516 8306 9277 + cds parB epicentre
6589 7106 9350 9867 + repeat_region parC epicentre
7322 7720 10083 10481 + misc_binding cos epicentre
7738 7771 10499 10532 + misc_recomb loxP epicentre
7938 8139 10699 10900 - cds LacZ epicentre
8008 8034 10769 10795 + primer_bind CC1fwd epicentre
8089 8106 10850 10867 + primer_bind T7 epicentre
cele-184-I
5716679 5725359 22585 32309 + mrna coding_transcript
5716679 5725359 22585 32309 + gene lim-7 coding_transcript
5716679 5716814 22585 22720 + cds coding_transcript
5716679 5716814 22585 22720 + exon coding_transcript
5716679 5716814 22585 22720 + cds genemarkhmm
5716679 5716814 22585 22720 + cds twinscan
5716815 5718527 22721 24433 + intron coding_transcript
5718528 5718575 24434 24481 + cds coding_transcript
5718528 5718575 24434 24481 + exon coding_transcript
5718528 5718575 24434 24481 + cds genemarkhmm
5718528 5718575 24434 24481 + cds twinscan
5718576 5718621 24482 24527 + intron coding_transcript
5718622 5718686 24528 24592 + cds coding_transcript
5718622 5718686 24528 24592 + exon coding_transcript
5718622 5718686 24528 24592 + cds genemarkhmm
5718622 5718686 24528 24592 + cds twinscan
5718687 5719914 24593 25820 + intron coding_transcript
5719915 5720000 25821 25906 + cds coding_transcript
5719915 5720000 25821 25906 + exon coding_transcript
5719915 5720000 25821 25906 + cds genemarkhmm
5719915 5720000 25821 25906 + cds twinscan
5720001 5720875 25907 26781 + intron coding_transcript
5720876 5721023 26782 26929 + cds coding_transcript
5720876 5721023 26782 26929 + exon coding_transcript
5720876 5721023 26782 26929 + cds genemarkhmm
5720876 5721023 26782 26929 + cds twinscan
5721024 5721171 26930 27077 + intron coding_transcript
5721172 5721377 27078 27283 + cds coding_transcript
5721172 5721377 27078 27283 + exon coding_transcript
5721172 5721377 27078 27283 + cds genemarkhmm
5721172 5721377 27078 27283 + cds twinscan
5721378 5721688 27284 27594 + intron coding_transcript
5721689 5722076 27595 27982 + cds twinscan
5721689 5722007 27595 27913 + cds coding_transcript
5721689 5722007 27595 27913 + exon coding_transcript
5721689 5722007 27595 27913 + cds genemarkhmm
5722008 5724800 27914 30706 + intron coding_transcript
5724801 5724965 30707 30871 + cds coding_transcript
5724801 5724965 30707 30871 + exon coding_transcript
5724801 5724965 30707 30871 + cds genemarkhmm
5724812 5724947 30718 30853 + cds genefinder
5724846 5724965 30752 30871 + cds twinscan
5724966 5725173 30872 31079 + intron coding_transcript
5725174 5725359 31080 32309 + cds coding_transcript
5725174 5725359 31080 32309 + exon coding_transcript
5725174 5725359 31080 32309 + cds genemarkhmm
5725174 5725359 31080 32309 + cds twinscan
S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFLAG
902 1138 31263 31499 + CDS 2xTY1wEGFP3xflag
902 960 31263 31321 + misc_feature 2xTY1.c.el
968 1834 31329 32195 + misc_feature ce_GFP_with_introns
1139 1189 31500 31550 + intron intron.1
1190 1343 31551 31704 + CDS 2xTY1wEGFP3xflag
1344 1394 31705 31755 + intron intron.2
1395 1558 31756 31919 + CDS 2xTY1wEGFP3xflag
1559 1609 31920 31970 + intron intron.3
1610 1872 31971 32199 + CDS 2xTY1wEGFP3xflag
3215 3248 32200 32233 + misc_recomb FRT
3249 3321 32234 32306 + CDS 2xTY1wEGFP3xflag
3256 3321 32241 32306 + CDS 3xFLAG-noRepeats
cele-184-I
5726387 5729310 33337 36260 - gene C04F1.1 coding_transcript

Sets(click to hide details)

Oligos(click to hide details)

Name/Sequence Export
lim-7[28501]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag_fwd
CATTCACTGCAACATCACACGATATATCATCACCGGCGCCGTGTGGAGAAgaagtgcataccaatcagga
 fasta Fasta
lim-7[28501]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag_rev
AAAAATTACAACCACACTTAAAATATGTAAACTATTTAAACTATCGTCTActtgtcgtcgtcatccttgt
 fasta Fasta