Clone: 6236103120536928 C09

Tagged gene: F47A4.1
Identifier: WBGene00009799

Clone WRM0618C_D03(pRedFlp-Hgr)(F47A4.1[36331]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag)dFRT::unc-119-Nat
Library UBC N2 fosmid library (Don Moreman) in E. coli EPI300
Genome Species: Caenorhabditis elegans, Release: 184

Validation(click to hide details)

Type Status Download / View
Grows in selection good
NGS-based tag validation good [view]

Genes in pCC1fos vector(click to hide details)

Gene Clone relative Genome relative
Name Length Start End Strand Start End Strand
unc-119-Nat 2761 240 3000 - 1031 3791 +

Features(click to show details)

Start (Source) End (Source) Start End Strand Type Name Source
pCC1fos
1 86 1 86 - cds LacZ epicentre
115 140 115 140 - primer_bind CC1rev epicentre
pTag[unc-119-Nat]
1031 3791 240 3000 - gene unc-119-Nat EMBL
3426 3532 499 605 - CDS unc-119 EMBL
2997 3374 657 1034 - CDS unc-119 EMBL
2842 2953 1078 1189 - CDS unc-119 EMBL
2687 2743 1288 1344 - CDS unc-119 EMBL
1604 1676 2355 2427 + promoter gb2 EMBL
1034 1603 2428 2997 + CDS NatR EMBL
pCC1fos
416 1075 3177 3836 - cds Cat epicentre
1294 1641 4055 4402 + cds redF epicentre
2025 2642 4786 5403 + rep_origin oriV epicentre
2642 2696 5403 5457 + rep_origin ori2 epicentre
3036 3791 5797 6552 + cds repE epicentre
4370 5545 7131 8306 + cds parA epicentre
5545 6516 8306 9277 + cds parB epicentre
6589 7106 9350 9867 + repeat_region parC epicentre
7322 7720 10083 10481 + misc_binding cos epicentre
7738 7771 10499 10532 + misc_recomb loxP epicentre
7938 8139 10699 10900 - cds LacZ epicentre
8008 8034 10769 10795 + primer_bind CC1fwd epicentre
8089 8106 10850 10867 + primer_bind T7 epicentre
cele-184-X
9810163 9822102 18399 30338 + gene dpy-22 coding_transcript
9810163 9822102 18399 30338 + gene landmark
9801021 9807594 32907 40524 + mrna coding_transcript
9801021 9807594 32907 40524 + gene F47A4.1 coding_transcript
9807323 9807594 32907 33178 + cds genefinder
9807327 9807594 32907 33174 + five_prime_utr coding_transcript
9807323 9807498 33003 33178 + cds history
9807323 9807498 33003 33178 + cds twinscan
9801021 9807448 33053 40524 + mrna coding_transcript
9807361 9807448 33053 33140 + five_prime_utr coding_transcript
9801406 9807410 33091 40139 + mrna coding_transcript
9807361 9807410 33091 33140 + cds coding_transcript
9807361 9807410 33091 33140 + exon coding_transcript
9806962 9807360 33141 33539 + intron coding_transcript
9806962 9807360 33141 33539 + intron coding_transcript
9806962 9807326 33175 33539 + intron coding_transcript
9806854 9806961 33540 33647 + cds coding_transcript
9806854 9806961 33540 33647 + exon coding_transcript
9806854 9806961 33540 33647 + cds genemarkhmm
9806854 9806961 33540 33647 + cds genefinder
9806854 9806961 33540 33647 + cds history
9806854 9806961 33540 33647 + cds twinscan
9806955 9806961 33540 33546 + five_prime_utr coding_transcript
9806955 9806961 33540 33546 + five_prime_utr coding_transcript
9806854 9806954 33547 33647 + cds coding_transcript
9806854 9806954 33547 33647 + exon coding_transcript
9806854 9806954 33547 33647 + exon coding_transcript
9806176 9806853 33648 34325 + intron coding_transcript
9806176 9806853 33648 34325 + intron coding_transcript
9806176 9806853 33648 34325 + intron coding_transcript
9806018 9806175 34326 34483 + cds coding_transcript
9806018 9806175 34326 34483 + cds coding_transcript
9806018 9806175 34326 34483 + exon coding_transcript
9806018 9806175 34326 34483 + exon coding_transcript
9806018 9806175 34326 34483 + exon coding_transcript
9806018 9806175 34326 34483 + cds genemarkhmm
9806018 9806175 34326 34483 + cds genefinder
9806018 9806175 34326 34483 + cds history
9806018 9806175 34326 34483 + cds twinscan
9805957 9806017 34484 34544 + intron coding_transcript
9805957 9806017 34484 34544 + intron coding_transcript
9805957 9806017 34484 34544 + intron coding_transcript
9805892 9805956 34545 34609 + cds coding_transcript
9805892 9805956 34545 34609 + cds coding_transcript
9805892 9805956 34545 34609 + exon coding_transcript
9805892 9805956 34545 34609 + exon coding_transcript
9805892 9805956 34545 34609 + exon coding_transcript
9805892 9805956 34545 34609 + cds genemarkhmm
9805892 9805956 34545 34609 + cds genefinder
9805892 9805956 34545 34609 + cds history
9805892 9805956 34545 34609 + cds twinscan
9805842 9805891 34610 34659 + intron coding_transcript
9805842 9805891 34610 34659 + intron coding_transcript
9805842 9805891 34610 34659 + intron coding_transcript
9805712 9805841 34660 34789 + cds coding_transcript
9805712 9805841 34660 34789 + cds coding_transcript
9805712 9805841 34660 34789 + exon coding_transcript
9805712 9805841 34660 34789 + exon coding_transcript
9805712 9805841 34660 34789 + exon coding_transcript
9805712 9805841 34660 34789 + cds genemarkhmm
9805712 9805841 34660 34789 + cds genefinder
9805712 9805841 34660 34789 + cds history
9805712 9805841 34660 34789 + cds twinscan
9804765 9805711 34790 35736 + intron coding_transcript
9804765 9805711 34790 35736 + intron coding_transcript
9804765 9805711 34790 35736 + intron coding_transcript
9805200 9805393 35108 35301 + cds genefinder
9804919 9804996 35505 35582 + cds genefinder
9804646 9804764 35737 35855 + cds coding_transcript
9804646 9804764 35737 35855 + cds coding_transcript
9804646 9804764 35737 35855 + exon coding_transcript
9804646 9804764 35737 35855 + exon coding_transcript
9804646 9804764 35737 35855 + exon coding_transcript
9804646 9804764 35737 35855 + cds genemarkhmm
9804646 9804764 35737 35855 + cds history
9804646 9804764 35737 35855 + cds twinscan
9804537 9804645 35856 35964 + intron coding_transcript
9804537 9804645 35856 35964 + intron coding_transcript
9804537 9804645 35856 35964 + intron coding_transcript
9804432 9804536 35965 36069 + cds coding_transcript
9804432 9804536 35965 36069 + cds coding_transcript
9804432 9804536 35965 36069 + exon coding_transcript
9804432 9804536 35965 36069 + exon coding_transcript
9804432 9804536 35965 36069 + exon coding_transcript
9804432 9804536 35965 36069 + cds genemarkhmm
9804432 9804536 35965 36069 + cds genefinder
9804432 9804536 35965 36069 + cds history
9804432 9804536 35965 36069 + cds twinscan
9803999 9804431 36070 36502 + intron coding_transcript
9803999 9804431 36070 36502 + intron coding_transcript
9803999 9804431 36070 36502 + intron coding_transcript
9803825 9803998 36503 36676 + cds genefinder
9803833 9803998 36503 36668 + cds coding_transcript
9803833 9803998 36503 36668 + cds coding_transcript
9803833 9803998 36503 36668 + exon coding_transcript
9803833 9803998 36503 36668 + exon coding_transcript
9803833 9803998 36503 36668 + exon coding_transcript
9803833 9803998 36503 36668 + cds genemarkhmm
9803833 9803998 36503 36668 + cds history
9803833 9803998 36503 36668 + cds twinscan
9802495 9803832 36669 38006 + intron coding_transcript
9802495 9803832 36669 38006 + intron coding_transcript
9802495 9803832 36669 38006 + intron coding_transcript
9802194 9802494 38007 38307 + cds history
9802395 9802494 38007 38106 + cds coding_transcript
9802395 9802494 38007 38106 + cds coding_transcript
9802395 9802494 38007 38106 + exon coding_transcript
9802395 9802494 38007 38106 + exon coding_transcript
9802395 9802494 38007 38106 + exon coding_transcript
9802395 9802494 38007 38106 + cds genemarkhmm
9802395 9802494 38007 38106 + cds twinscan
9802395 9802492 38009 38106 + cds genefinder
9802299 9802394 38107 38202 + intron coding_transcript
9802299 9802394 38107 38202 + intron coding_transcript
9802299 9802394 38107 38202 + intron coding_transcript
9802194 9802298 38203 38307 + cds coding_transcript
9802194 9802298 38203 38307 + cds coding_transcript
9802194 9802298 38203 38307 + exon coding_transcript
9802194 9802298 38203 38307 + exon coding_transcript
9802194 9802298 38203 38307 + exon coding_transcript
9802194 9802298 38203 38307 + cds genemarkhmm
9802194 9802298 38203 38307 + cds twinscan
9802194 9802298 38203 38307 + cds genefinder
9802145 9802193 38308 38356 + intron coding_transcript
9802145 9802193 38308 38356 + intron coding_transcript
9802145 9802193 38308 38356 + intron coding_transcript
9802017 9802144 38357 38484 + cds history
9802035 9802144 38357 38466 + cds coding_transcript
9802035 9802144 38357 38466 + cds coding_transcript
9802035 9802144 38357 38466 + exon coding_transcript
9802035 9802144 38357 38466 + exon coding_transcript
9802035 9802144 38357 38466 + exon coding_transcript
9802035 9802144 38357 38466 + cds genemarkhmm
9802035 9802144 38357 38466 + cds twinscan
9802035 9802144 38357 38466 + cds genefinder
9801477 9802034 38467 39024 + intron coding_transcript
9801477 9802034 38467 39024 + intron coding_transcript
9801477 9802034 38467 39024 + intron coding_transcript
9801406 9801476 39025 40139 + cds coding_transcript
9801406 9801476 39025 40139 + cds coding_transcript
9801406 9801476 39025 40139 + exon coding_transcript
9801406 9801476 39025 40139 + exon coding_transcript
9801406 9801476 39025 40139 + exon coding_transcript
9801406 9801476 39025 40139 + cds genemarkhmm
9801406 9801476 39025 40139 + cds history
9801406 9801476 39025 40139 + cds twinscan
S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFLAG
902 1138 39093 39329 + CDS 2xTY1wEGFP3xflag
902 960 39093 39151 + misc_feature 2xTY1.c.el
968 1834 39159 40025 + misc_feature ce_GFP_with_introns
1139 1189 39330 39380 + intron intron.1
1190 1343 39381 39534 + CDS 2xTY1wEGFP3xflag
1344 1394 39535 39585 + intron intron.2
1395 1558 39586 39749 + CDS 2xTY1wEGFP3xflag
1559 1609 39750 39800 + intron intron.3
1610 1872 39801 40029 + CDS 2xTY1wEGFP3xflag
3215 3248 40030 40063 + misc_recomb FRT
3249 3321 40064 40136 + CDS 2xTY1wEGFP3xflag
3256 3321 40071 40136 + CDS 3xFLAG-noRepeats
cele-184-X
9801021 9801405 40140 40524 + three_prime_utr coding_transcript
9801021 9801405 40140 40524 + three_prime_utr coding_transcript
9801181 9801206 40339 40364 + cds genefinder
9799387 9800970 40575 42158 - gene F36G3.3 coding_transcript
9792334 9794205 47340 49211 + gene F36G3.2 coding_transcript

Sets(click to hide details)

Oligos(click to hide details)

Name/Sequence Export
F47A4.1[36331]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag_fwd
ACTTCATATATTGGTTTGTTTACATGAAACAAGCATGGGATCAGGCACCAgaagtgcataccaatcagga
 fasta Fasta
F47A4.1[36331]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag_rev
ATGGTTGAAGGACTATTAGTTGGAAATTTGGTCTATGCATTTGTTGATTActtgtcgtcgtcatccttgt
 fasta Fasta