Clone: 915685980012804 D10
Tagged gene: egl-38
Identifier: WBGene00001204
| Clone | WRM0640A_G02(pRedFlp-Hgr)::unc-119-Nat(egl-38[35729]::2XTY1-eGFP(C.ele)-3XFLAG)dFRT |
|---|---|
| Library | UBC N2 fosmid library (Don Moreman) in E. coli EPI300 |
| Genome | Species: Caenorhabditis elegans, Release: 184 |
GenBank
GFF
Validation(click to hide details)
| Type | Status | Download / View |
|---|---|---|
| Grows in selection | good |
Genes in pCC1fos vector(click to hide details)
| Gene | Clone relative | Genome relative | |||||
|---|---|---|---|---|---|---|---|
| Name | Length | Start | End | Strand | Start | End | Strand |
| unc-119-Nat | 2761 | 240 | 3000 | - | 1031 | 3791 | + |
Features(click to show details)
| Start (Source) | End (Source) | Start | End | Strand | Type | Name | Source | |
|---|---|---|---|---|---|---|---|---|
| pCC1fos | ||||||||
| 1 | 86 | 1 | 86 | - | cds | LacZ | epicentre | |
| 115 | 140 | 115 | 140 | - | primer_bind | CC1rev | epicentre | |
| pTag[unc-119-Nat] | ||||||||
| 1031 | 3791 | 240 | 3000 | - | gene | unc-119-Nat | EMBL | |
| 3426 | 3532 | 499 | 605 | - | CDS | unc-119 | EMBL | |
| 2997 | 3374 | 657 | 1034 | - | CDS | unc-119 | EMBL | |
| 2842 | 2953 | 1078 | 1189 | - | CDS | unc-119 | EMBL | |
| 2687 | 2743 | 1288 | 1344 | - | CDS | unc-119 | EMBL | |
| 1604 | 1676 | 2355 | 2427 | + | promoter | gb2 | EMBL | |
| 1034 | 1603 | 2428 | 2997 | + | CDS | NatR | EMBL | |
| pCC1fos | ||||||||
| 416 | 1075 | 3177 | 3836 | - | cds | Cat | epicentre | |
| 1294 | 1641 | 4055 | 4402 | + | cds | redF | epicentre | |
| 2025 | 2642 | 4786 | 5403 | + | rep_origin | oriV | epicentre | |
| 2642 | 2696 | 5403 | 5457 | + | rep_origin | ori2 | epicentre | |
| 3036 | 3791 | 5797 | 6552 | + | cds | repE | epicentre | |
| 4370 | 5545 | 7131 | 8306 | + | cds | parA | epicentre | |
| 5545 | 6516 | 8306 | 9277 | + | cds | parB | epicentre | |
| 6589 | 7106 | 9350 | 9867 | + | repeat_region | parC | epicentre | |
| 7322 | 7720 | 10083 | 10481 | + | misc_binding | cos | epicentre | |
| 7738 | 7771 | 10499 | 10532 | + | misc_recomb | loxP | epicentre | |
| 7938 | 8139 | 10699 | 10900 | - | cds | LacZ | epicentre | |
| 8008 | 8034 | 10769 | 10795 | + | primer_bind | CC1fwd | epicentre | |
| 8089 | 8106 | 10850 | 10867 | + | primer_bind | T7 | epicentre | |
| cele-184-IV | ||||||||
| 10083463 | 10084345 | 12186 | 13068 | - | gene | W01B6.8 | coding_transcript | |
| 10084426 | 10085410 | 13149 | 14133 | - | gene | col-2 | coding_transcript | |
| 10086107 | 10088448 | 14830 | 17171 | + | gene | ndc-80 | coding_transcript | |
| 10088455 | 10089861 | 17178 | 18584 | - | gene | ttr-39 | coding_transcript | |
| 10090706 | 10092307 | 19429 | 21030 | + | gene | C04G2.2 | coding_transcript | |
| 10094224 | 10095197 | 22947 | 23920 | - | gene | C04G2.5 | coding_transcript | |
| 10095372 | 10095823 | 24095 | 24546 | + | gene | msp-36 | coding_transcript | |
| 10097180 | 10106528 | 25903 | 35251 | + | gene | dis-3 | coding_transcript | |
| 10107007 | 10110384 | 35730 | 40151 | - | mrna | coding_transcript | ||
| 10107007 | 10110384 | 35730 | 40151 | - | gene | egl-38 | coding_transcript | |
| 10107007 | 10107197 | 35730 | 36964 | - | exon | coding_transcript | ||
| 10107007 | 10107197 | 35730 | 36964 | - | cds | coding_transcript | ||
| 10107007 | 10107197 | 35730 | 36964 | - | cds | genemarkhmm | ||
| 10107007 | 10107197 | 35730 | 36964 | - | cds | genefinder | ||
| 10107007 | 10107197 | 35730 | 36964 | - | cds | twinscan | ||
| S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFLAG | ||||||||
| 3249 | 3321 | 35733 | 35805 | - | CDS | 2xTY1wEGFP3xflag | ||
| 3256 | 3321 | 35733 | 35798 | - | CDS | 3xFLAG-noRepeats | ||
| 1610 | 1872 | 35806 | 36068 | - | CDS | 2xTY1wEGFP3xflag | ||
| 1839 | 1872 | 35806 | 35839 | - | misc_recomb | FRT | ||
| 968 | 1834 | 35844 | 36710 | - | misc_feature | ce_GFP_with_introns | ||
| 1559 | 1609 | 36069 | 36119 | - | intron | intron.3 | ||
| 1395 | 1558 | 36120 | 36283 | - | CDS | 2xTY1wEGFP3xflag | ||
| 1344 | 1394 | 36284 | 36334 | - | intron | intron.2 | ||
| 1190 | 1343 | 36335 | 36488 | - | CDS | 2xTY1wEGFP3xflag | ||
| 1139 | 1189 | 36489 | 36539 | - | intron | intron.1 | ||
| 902 | 1138 | 36540 | 36776 | - | CDS | 2xTY1wEGFP3xflag | ||
| 902 | 960 | 36718 | 36776 | - | misc_feature | 2xTY1.c.el | ||
| cele-184-IV | ||||||||
| 10107198 | 10107442 | 36965 | 37209 | - | intron | coding_transcript | ||
| 10107443 | 10107656 | 37210 | 37423 | - | exon | coding_transcript | ||
| 10107443 | 10107656 | 37210 | 37423 | - | cds | coding_transcript | ||
| 10107443 | 10107656 | 37210 | 37423 | - | cds | genemarkhmm | ||
| 10107443 | 10107656 | 37210 | 37423 | - | cds | genefinder | ||
| 10107443 | 10107656 | 37210 | 37423 | - | cds | twinscan | ||
| 10107657 | 10108494 | 37424 | 38261 | - | intron | coding_transcript | ||
| 10108495 | 10108560 | 38262 | 38327 | - | exon | coding_transcript | ||
| 10108495 | 10108560 | 38262 | 38327 | - | cds | coding_transcript | ||
| 10108495 | 10108560 | 38262 | 38327 | - | cds | genemarkhmm | ||
| 10108495 | 10108560 | 38262 | 38327 | - | cds | genefinder | ||
| 10108495 | 10108560 | 38262 | 38327 | - | cds | twinscan | ||
| 10108561 | 10108641 | 38328 | 38408 | - | intron | coding_transcript | ||
| 10108642 | 10108760 | 38409 | 38527 | - | exon | coding_transcript | ||
| 10108642 | 10108760 | 38409 | 38527 | - | cds | coding_transcript | ||
| 10108642 | 10108760 | 38409 | 38527 | - | cds | genemarkhmm | ||
| 10108642 | 10108760 | 38409 | 38527 | - | cds | genefinder | ||
| 10108642 | 10108760 | 38409 | 38527 | - | cds | twinscan | ||
| 10108761 | 10108916 | 38528 | 38683 | - | intron | coding_transcript | ||
| 10108917 | 10108981 | 38684 | 38748 | - | exon | coding_transcript | ||
| 10108917 | 10108981 | 38684 | 38748 | - | cds | coding_transcript | ||
| 10108917 | 10108981 | 38684 | 38748 | - | cds | genemarkhmm | ||
| 10108917 | 10108981 | 38684 | 38748 | - | cds | genefinder | ||
| 10108917 | 10108981 | 38684 | 38748 | - | cds | twinscan | ||
| 10108982 | 10109159 | 38749 | 38926 | - | intron | coding_transcript | ||
| 10109160 | 10109310 | 38927 | 39077 | - | exon | coding_transcript | ||
| 10109160 | 10109310 | 38927 | 39077 | - | cds | coding_transcript | ||
| 10109160 | 10109310 | 38927 | 39077 | - | cds | genefinder | ||
| 10109160 | 10109310 | 38927 | 39077 | - | cds | twinscan | ||
| 10109160 | 10109206 | 38927 | 38973 | - | cds | genemarkhmm | ||
| 10109311 | 10110320 | 39078 | 40087 | - | intron | coding_transcript | ||
| 10109772 | 10109784 | 39539 | 39551 | - | cds | twinscan | ||
| 10110319 | 10111549 | 40086 | 41316 | - | gene | C04G2.8 | coding_transcript | |
| 10110319 | 10110324 | 40086 | 40091 | - | three_prime_utr | coding_transcript | ||
| 10110321 | 10110384 | 40088 | 40151 | - | exon | coding_transcript | ||
| 10110321 | 10110384 | 40088 | 40151 | - | cds | coding_transcript | ||
| 10110321 | 10110384 | 40088 | 40151 | - | cds | genefinder | ||
| 10112862 | 10114188 | 42629 | 43955 | + | gene | C04G2.9 | coding_transcript | |
Sets(click to hide details)
Oligos(click to hide details)
| Name/Sequence | Export |
|---|---|
|
egl-38[35729]::2XTY1-eGFP(C.ele)-3XFLAG_fwd
CAATGAGGACTCCAATGGTTATTCTACCACAAAACTATTGTGGACAATTGgaagtgcataccaatcagga
|
Fasta
|
|
egl-38[35729]::2XTY1-eGFP(C.ele)-3XFLAG_rev
TTAGCAAAAAATATATATTGGATTCTCAATAAAGCTAACTTTCATTTCTActtgtcgtcgtcatccttgt
|
Fasta
|