Clone: 18024770336767915 C11

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Validation

Type	Status	Download / View
Grows in selection	good

Genes in pCC1fos vector

Gene		Clone relative			Genome relative
Name	Length	Start	End	Strand	Start	End	Strand
unc-119-Nat	2761	240	3000	-	1031	3791	+

Features

Start (Source)	End (Source)	Start	End	Strand	Type	Name	Source
pCC1fos
1	86	1	86	-	cds	LacZ	epicentre
115	140	115	140	-	primer_bind	CC1rev	epicentre
pTag[unc-119-Nat]
1031	3791	240	3000	-	gene	unc-119-Nat	EMBL
3426	3532	499	605	-	CDS	unc-119	EMBL
2997	3374	657	1034	-	CDS	unc-119	EMBL
2842	2953	1078	1189	-	CDS	unc-119	EMBL
2687	2743	1288	1344	-	CDS	unc-119	EMBL
1604	1676	2355	2427	+	promoter	gb2	EMBL
1034	1603	2428	2997	+	CDS	NatR	EMBL
pCC1fos
416	1075	3177	3836	-	cds	Cat	epicentre
1294	1641	4055	4402	+	cds	redF	epicentre
2025	2642	4786	5403	+	rep_origin	oriV	epicentre
2642	2696	5403	5457	+	rep_origin	ori2	epicentre
3036	3791	5797	6552	+	cds	repE	epicentre
4370	5545	7131	8306	+	cds	parA	epicentre
5545	6516	8306	9277	+	cds	parB	epicentre
6589	7106	9350	9867	+	repeat_region	parC	epicentre
7322	7720	10083	10481	+	misc_binding	cos	epicentre
7738	7771	10499	10532	+	misc_recomb	loxP	epicentre
7938	8139	10699	10900	-	cds	LacZ	epicentre
8008	8034	10769	10795	+	primer_bind	CC1fwd	epicentre
8089	8106	10850	10867	+	primer_bind	T7	epicentre
cele-184-III
9404291	9406542	15544	17795	+	gene	T26G10.1	coding_transcript
9394047	9404433	17653	28039	-	gene	rgr-1	coding_transcript
9400546	9400968	21118	21540	+	gene	C38C10.6	coding_transcript
9391171	9393065	29021	31959	+	mrna		coding_transcript
9391171	9393065	29021	31959	+	gene	gpr-2	coding_transcript
9393043	9393065	29021	29043	+	five_prime_utr		coding_transcript
9392795	9393042	29044	29291	+	cds		coding_transcript
9392795	9393042	29044	29291	+	exon		coding_transcript
9392795	9393042	29044	29291	+	cds		genemarkhmm
9392795	9393042	29044	29291	+	cds		genefinder
9392795	9393042	29044	29291	+	cds		twinscan
9392742	9392794	29292	29344	+	intron		coding_transcript
9392241	9392741	29345	29845	+	cds		coding_transcript
9392241	9392741	29345	29845	+	exon		coding_transcript
9392241	9392741	29345	29845	+	cds		genemarkhmm
9392241	9392741	29345	29845	+	cds		genefinder
9392241	9392741	29345	29845	+	cds		twinscan
9392191	9392240	29846	29895	+	intron		coding_transcript
9391583	9392190	29896	30503	+	cds		coding_transcript
9391583	9392190	29896	30503	+	exon		coding_transcript
9391583	9392190	29896	30503	+	cds		genemarkhmm
9391583	9392190	29896	30503	+	cds		genefinder
9391583	9392190	29896	30503	+	cds		twinscan
9391531	9391582	30504	30555	+	intron		coding_transcript
9391310	9391530	30556	31820	+	cds		coding_transcript
9391310	9391530	30556	31820	+	exon		coding_transcript
9391310	9391530	30556	31820	+	cds		genemarkhmm
9391310	9391530	30556	31820	+	cds		genefinder
9391310	9391530	30556	31820	+	cds		twinscan
S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFLAG
902	1138	30774	31010	+	CDS	2xTY1wEGFP3xflag
902	960	30774	30832	+	misc_feature	2xTY1.c.el
968	1834	30840	31706	+	misc_feature	ce_GFP_with_introns
1139	1189	31011	31061	+	intron	intron.1
1190	1343	31062	31215	+	CDS	2xTY1wEGFP3xflag
1344	1394	31216	31266	+	intron	intron.2
1395	1558	31267	31430	+	CDS	2xTY1wEGFP3xflag
1559	1609	31431	31481	+	intron	intron.3
1610	1872	31482	31710	+	CDS	2xTY1wEGFP3xflag
3215	3248	31711	31744	+	misc_recomb	FRT
3249	3321	31745	31817	+	CDS	2xTY1wEGFP3xflag
3256	3321	31752	31817	+	CDS	3xFLAG-noRepeats
cele-184-III
9391171	9391309	31821	31959	+	three_prime_utr		coding_transcript
9387502	9390010	33120	35628	+	gene	C38C10.2	coding_transcript
9385564	9387506	35624	37566	-	gene	tkr-1	coding_transcript
9384073	9385498	37632	39057	+	gene	C38C10.3	coding_transcript

Sets

Oligos

Name/Sequence	Export
gpr-2[30770]::2XTY1-eGFP(C.ele)-3XFLAG_rev AAATAAATAAAGTTTGATTGTATTATTTGACAGAAAAAATAATGGTCCTActtgtcgtcgtcatccttgt	Fasta
gpr-2[30770]::2XTY1-eGFP(C.ele)-3XFLAG_fwd CGATACAGGGCGATGATACTCGAAGCGATGATGTGACAATGACGTCCAAAgaagtgcataccaatcagga	Fasta